miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26828 3' -47.7 NC_005809.1 + 37299 0.71 0.803614
Target:  5'- gACAACGCc-GCgAACAUCAAcacgGUGGCCg -3'
miRNA:   3'- -UGUUGCGucUG-UUGUAGUUa---CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 37219 0.69 0.894171
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5'
26828 3' -47.7 NC_005809.1 + 37158 0.73 0.680895
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26828 3' -47.7 NC_005809.1 + 37009 0.68 0.90167
Target:  5'- nCAGCGUuGGCGcCGUCGAUaccguggcggGCGACCu -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGUUA----------CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 36981 0.74 0.609989
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 36592 0.66 0.973756
Target:  5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3'
miRNA:   3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5'
26828 3' -47.7 NC_005809.1 + 36062 0.67 0.956683
Target:  5'- -gGGCGCAgGACAacaacuacggcaagcGCGUgAAUGCgGGCCu -3'
miRNA:   3'- ugUUGCGU-CUGU---------------UGUAgUUACG-CUGG- -5'
26828 3' -47.7 NC_005809.1 + 35320 0.69 0.87826
Target:  5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3'
miRNA:   3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 34808 0.67 0.950255
Target:  5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3'
miRNA:   3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5'
26828 3' -47.7 NC_005809.1 + 34760 0.71 0.793221
Target:  5'- gGCAACGaGGGCAACAUCca-GCG-CCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUAGuuaCGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 34592 0.7 0.861174
Target:  5'- -gAGCGCGG-CGACAUggaaaccaCGAUGCGcGCCg -3'
miRNA:   3'- ugUUGCGUCuGUUGUA--------GUUACGC-UGG- -5'
26828 3' -47.7 NC_005809.1 + 34524 0.67 0.94478
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 34013 0.74 0.621822
Target:  5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3'
miRNA:   3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 33904 0.69 0.886366
Target:  5'- gGCGGCGCAGcagccgcugcacACAGCGauaCGGcGCGGCCu -3'
miRNA:   3'- -UGUUGCGUC------------UGUUGUa--GUUaCGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 33895 0.67 0.945293
Target:  5'- cCAACGCcgaGGugcgcGCGGCAcgCAAUGcCGACCg -3'
miRNA:   3'- uGUUGCG---UC-----UGUUGUa-GUUAC-GCUGG- -5'
26828 3' -47.7 NC_005809.1 + 33785 0.66 0.967068
Target:  5'- cCGGCGCGGcCGACccAUCG-UGCG-CCg -3'
miRNA:   3'- uGUUGCGUCuGUUG--UAGUuACGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 33383 0.66 0.963306
Target:  5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3'
miRNA:   3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 33186 0.66 0.973756
Target:  5'- cGCGACauGCAGugGcuGCA-CAAUgcacGCGGCCg -3'
miRNA:   3'- -UGUUG--CGUCugU--UGUaGUUA----CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 32885 0.68 0.922279
Target:  5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3'
miRNA:   3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 31502 0.71 0.802584
Target:  5'- cGCGACcCGGACAcguucgaGCAguucgucgcCAAUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUCUGU-------UGUa--------GUUACGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.