miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26828 3' -47.7 NC_005809.1 + 41582 0.66 0.973756
Target:  5'- -uGGCGCGGGCAGCGggcugaCGGUGaagGGCUg -3'
miRNA:   3'- ugUUGCGUCUGUUGUa-----GUUACg--CUGG- -5'
26828 3' -47.7 NC_005809.1 + 40485 0.67 0.933847
Target:  5'- -gGGCGCgcuacauGGACGACAUCGuggugcuggGCGACg -3'
miRNA:   3'- ugUUGCG-------UCUGUUGUAGUua-------CGCUGg -5'
26828 3' -47.7 NC_005809.1 + 40460 0.71 0.771863
Target:  5'- aACGGCGCAaucuauaccGACGACAcg---GCGACCa -3'
miRNA:   3'- -UGUUGCGU---------CUGUUGUaguuaCGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 39883 0.66 0.971863
Target:  5'- uCGAC-CAGAuCAcCAccugggaaaaucugcUCGAUGCGACCg -3'
miRNA:   3'- uGUUGcGUCU-GUuGU---------------AGUUACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 39841 0.68 0.915727
Target:  5'- aGCAGCGcCGGGCcGCGcUCAA-GCGuCCg -3'
miRNA:   3'- -UGUUGC-GUCUGuUGU-AGUUaCGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 39125 0.67 0.954907
Target:  5'- -gGGCGC--GCGGCGUC--UGUGACCa -3'
miRNA:   3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 39023 0.68 0.908856
Target:  5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3'
miRNA:   3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 38467 0.67 0.954456
Target:  5'- uGCAGCGCAGGCuggcggaAACAcCAcgGCgcaGAUCa -3'
miRNA:   3'- -UGUUGCGUCUG-------UUGUaGUuaCG---CUGG- -5'
26828 3' -47.7 NC_005809.1 + 38426 0.66 0.967068
Target:  5'- cGCAAgGUGGGCGGCuUCcacuAUGCG-CCg -3'
miRNA:   3'- -UGUUgCGUCUGUUGuAGu---UACGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 38377 0.68 0.922279
Target:  5'- gACGugcuCGCGGcCAACAugcccgccaUCGAgGCGGCCg -3'
miRNA:   3'- -UGUu---GCGUCuGUUGU---------AGUUaCGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 38228 0.72 0.760927
Target:  5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3'
miRNA:   3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5'
26828 3' -47.7 NC_005809.1 + 37954 0.76 0.539838
Target:  5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3'
miRNA:   3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5'
26828 3' -47.7 NC_005809.1 + 37871 0.67 0.945293
Target:  5'- gGCuACGaGGGCGGCGUCGGUGCcuuucucACCg -3'
miRNA:   3'- -UGuUGCgUCUGUUGUAGUUACGc------UGG- -5'
26828 3' -47.7 NC_005809.1 + 37814 0.69 0.894171
Target:  5'- gGCgAACGCcGAgAACAUCGcgGCcguGGCCg -3'
miRNA:   3'- -UG-UUGCGuCUgUUGUAGUuaCG---CUGG- -5'
26828 3' -47.7 NC_005809.1 + 37716 0.67 0.94478
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 37619 0.67 0.954907
Target:  5'- aGCAGCGCGauacgcGGCuGCAUCGugGCGcCCg -3'
miRNA:   3'- -UGUUGCGU------CUGuUGUAGUuaCGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 37555 0.75 0.579356
Target:  5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3'
miRNA:   3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5'
26828 3' -47.7 NC_005809.1 + 37509 0.83 0.228749
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26828 3' -47.7 NC_005809.1 + 37449 1.14 0.002008
Target:  5'- gACAACGCAGACAACAUCAAUGCGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUAGUUACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 37398 0.74 0.621822
Target:  5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3'
miRNA:   3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.