miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26828 5' -50.4 NC_005809.1 + 35395 0.66 0.905752
Target:  5'- -cGGCu-GCGUCAggGCgucAGCGcGUCGGg -3'
miRNA:   3'- guUCGcuUGUAGUuaCG---UCGC-CAGCC- -5'
26828 5' -50.4 NC_005809.1 + 24332 0.66 0.905752
Target:  5'- uCAGGCG-GCAgagCGAUGCccguGUuguuGGUCGGg -3'
miRNA:   3'- -GUUCGCuUGUa--GUUACGu---CG----CCAGCC- -5'
26828 5' -50.4 NC_005809.1 + 25906 0.66 0.905752
Target:  5'- uCAGGCGggUuUCGAcuUGCAGCuugCGGu -3'
miRNA:   3'- -GUUCGCuuGuAGUU--ACGUCGccaGCC- -5'
26828 5' -50.4 NC_005809.1 + 40726 0.66 0.901493
Target:  5'- -cGGCGAGgAUgAAucucUGCAGCGGuuucucgccucguggUCGGg -3'
miRNA:   3'- guUCGCUUgUAgUU----ACGUCGCC---------------AGCC- -5'
26828 5' -50.4 NC_005809.1 + 23416 0.66 0.898593
Target:  5'- uGAGCGcGCcgGUCAGUGCGacGCcGGcCGGg -3'
miRNA:   3'- gUUCGCuUG--UAGUUACGU--CG-CCaGCC- -5'
26828 5' -50.4 NC_005809.1 + 7327 0.66 0.898593
Target:  5'- --uGCGAACG-CA--GCAGCcGGUUGGc -3'
miRNA:   3'- guuCGCUUGUaGUuaCGUCG-CCAGCC- -5'
26828 5' -50.4 NC_005809.1 + 39381 0.66 0.898593
Target:  5'- uCAGGUGAGCAagCuguacGCAGCGGacgcCGGg -3'
miRNA:   3'- -GUUCGCUUGUa-Guua--CGUCGCCa---GCC- -5'
26828 5' -50.4 NC_005809.1 + 3799 0.66 0.891139
Target:  5'- -cGGuCGGGCAgc-AUGaccaGGCGGUCGGg -3'
miRNA:   3'- guUC-GCUUGUaguUACg---UCGCCAGCC- -5'
26828 5' -50.4 NC_005809.1 + 10225 0.66 0.891139
Target:  5'- -cGGCGAccGCAgCGAccuggGCGGCGGuugUCGGg -3'
miRNA:   3'- guUCGCU--UGUaGUUa----CGUCGCC---AGCC- -5'
26828 5' -50.4 NC_005809.1 + 7253 0.66 0.883392
Target:  5'- gCGGGCcGAUGUCGccggccuuGUGCAGCuucucggcgguGGUCGGa -3'
miRNA:   3'- -GUUCGcUUGUAGU--------UACGUCG-----------CCAGCC- -5'
26828 5' -50.4 NC_005809.1 + 17758 0.66 0.875361
Target:  5'- cCAGGUGuGCAguUCGA-GCAGCGaGUCGc -3'
miRNA:   3'- -GUUCGCuUGU--AGUUaCGUCGC-CAGCc -5'
26828 5' -50.4 NC_005809.1 + 4523 0.67 0.849627
Target:  5'- --cGUGAACGUgGcGUGCugGGCGGUCGu -3'
miRNA:   3'- guuCGCUUGUAgU-UACG--UCGCCAGCc -5'
26828 5' -50.4 NC_005809.1 + 9516 0.67 0.849627
Target:  5'- -uGGCGAACAguggCAucAUGCuGCGGcccuguUCGGc -3'
miRNA:   3'- guUCGCUUGUa---GU--UACGuCGCC------AGCC- -5'
26828 5' -50.4 NC_005809.1 + 14719 0.67 0.849627
Target:  5'- --cGCGGACAcguUCuugaGCAGCGGcgCGGc -3'
miRNA:   3'- guuCGCUUGU---AGuua-CGUCGCCa-GCC- -5'
26828 5' -50.4 NC_005809.1 + 42105 0.67 0.840532
Target:  5'- -uGGCGAuuGUCGAaGCGGUGGUgcgCGGc -3'
miRNA:   3'- guUCGCUugUAGUUaCGUCGCCA---GCC- -5'
26828 5' -50.4 NC_005809.1 + 40300 0.67 0.831194
Target:  5'- -cAGCGAACccaucGUCAacGUGguGCGcGUCGa -3'
miRNA:   3'- guUCGCUUG-----UAGU--UACguCGC-CAGCc -5'
26828 5' -50.4 NC_005809.1 + 26031 0.68 0.821624
Target:  5'- -cGGCGAugGCAUCAAaGCccgcGCGG-CGGg -3'
miRNA:   3'- guUCGCU--UGUAGUUaCGu---CGCCaGCC- -5'
26828 5' -50.4 NC_005809.1 + 21666 0.68 0.811834
Target:  5'- aAGGCuGGGCAUCGAcacguUGcCGGCaGUCGGu -3'
miRNA:   3'- gUUCG-CUUGUAGUU-----AC-GUCGcCAGCC- -5'
26828 5' -50.4 NC_005809.1 + 14752 0.68 0.801835
Target:  5'- --cGCGcAGCAUUGGcgcGCAGCGuGUCGGu -3'
miRNA:   3'- guuCGC-UUGUAGUUa--CGUCGC-CAGCC- -5'
26828 5' -50.4 NC_005809.1 + 10452 0.68 0.791639
Target:  5'- --cGgGGGCGUCGAggucgGCAGCGGcCaGGg -3'
miRNA:   3'- guuCgCUUGUAGUUa----CGUCGCCaG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.