miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 3' -50.7 NC_005809.1 + 4106 0.67 0.847627
Target:  5'- gGGCGGCGCugaauucguCGCGGuCGUCGGCuuCGGu -3'
miRNA:   3'- gCUGUUGCG---------GCGCUuGUAGUUGu-GCC- -5'
26829 3' -50.7 NC_005809.1 + 23377 0.67 0.847626
Target:  5'- uGGCGuGC-CCGCuGAAaAUCAGCACGGu -3'
miRNA:   3'- gCUGU-UGcGGCG-CUUgUAGUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 37619 0.67 0.847626
Target:  5'- -aGCAGCGCgauaCGCGGcuGCAUCGugGCGc -3'
miRNA:   3'- gcUGUUGCG----GCGCU--UGUAGUugUGCc -5'
26829 3' -50.7 NC_005809.1 + 996 0.67 0.846738
Target:  5'- uGGCggUGCCGUGGuucaccgcaGCGUCGAacaccuggaaggcCACGGc -3'
miRNA:   3'- gCUGuuGCGGCGCU---------UGUAGUU-------------GUGCC- -5'
26829 3' -50.7 NC_005809.1 + 36784 0.68 0.838637
Target:  5'- uGGCGcUGCCGCGAugGCGg-GACACGa -3'
miRNA:   3'- gCUGUuGCGGCGCU--UGUagUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 41473 0.68 0.838637
Target:  5'- gCGAC-AUGCCGCG-----CGACACGGc -3'
miRNA:   3'- -GCUGuUGCGGCGCuuguaGUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 36487 0.68 0.829415
Target:  5'- -cGCAAgGCCGCGcucGACGacuUCGAgGCGGu -3'
miRNA:   3'- gcUGUUgCGGCGC---UUGU---AGUUgUGCC- -5'
26829 3' -50.7 NC_005809.1 + 34512 0.68 0.829415
Target:  5'- aGGCAGCGaCCuggGCGcGCGUCAugGaCGGc -3'
miRNA:   3'- gCUGUUGC-GG---CGCuUGUAGUugU-GCC- -5'
26829 3' -50.7 NC_005809.1 + 37590 0.68 0.829415
Target:  5'- gCGGUAGCGgCGaaCGAaggaaACGUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCgGC--GCU-----UGUAGUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 36128 0.68 0.819972
Target:  5'- aCGGCGACGCCuucGCGGGCGgugguguCGCGa -3'
miRNA:   3'- -GCUGUUGCGG---CGCUUGUaguu---GUGCc -5'
26829 3' -50.7 NC_005809.1 + 37813 0.68 0.819972
Target:  5'- gGGCgAACGCCGaGAACAUC---GCGGc -3'
miRNA:   3'- gCUG-UUGCGGCgCUUGUAGuugUGCC- -5'
26829 3' -50.7 NC_005809.1 + 25543 0.68 0.819972
Target:  5'- cCGGCAGCGCCcccguagcCGAugAUGUCGGCGuCGGa -3'
miRNA:   3'- -GCUGUUGCGGc-------GCU--UGUAGUUGU-GCC- -5'
26829 3' -50.7 NC_005809.1 + 35027 0.68 0.810318
Target:  5'- aCGACccgGCCGCGAGC--CAGCguGCGGa -3'
miRNA:   3'- -GCUGuugCGGCGCUUGuaGUUG--UGCC- -5'
26829 3' -50.7 NC_005809.1 + 27136 0.68 0.80934
Target:  5'- ---uGACGCCGCGcGCAUCAcucgaagucccccACGCGc -3'
miRNA:   3'- gcugUUGCGGCGCuUGUAGU-------------UGUGCc -5'
26829 3' -50.7 NC_005809.1 + 16419 0.68 0.807381
Target:  5'- gGACAcgGCCGCGGgguaaucgccggcgGCGUUgAACACGGc -3'
miRNA:   3'- gCUGUugCGGCGCU--------------UGUAG-UUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 32235 0.68 0.800463
Target:  5'- aGGCAcACGCCGC-AGCGaCGGCuACGGc -3'
miRNA:   3'- gCUGU-UGCGGCGcUUGUaGUUG-UGCC- -5'
26829 3' -50.7 NC_005809.1 + 24179 0.68 0.800463
Target:  5'- cCGACGugGCCGCcaccggcgcCAUCGGCAaGGc -3'
miRNA:   3'- -GCUGUugCGGCGcuu------GUAGUUGUgCC- -5'
26829 3' -50.7 NC_005809.1 + 24537 0.69 0.79042
Target:  5'- gGugGAUGaCCGCGuggucGCG-CAGCGCGGc -3'
miRNA:   3'- gCugUUGC-GGCGCu----UGUaGUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 28035 0.69 0.79042
Target:  5'- uCGGCGuCGCCGaaGAACAcgUCGGCgACGGu -3'
miRNA:   3'- -GCUGUuGCGGCg-CUUGU--AGUUG-UGCC- -5'
26829 3' -50.7 NC_005809.1 + 28092 0.69 0.79042
Target:  5'- gCGGCGucguauucCGUCGCGGugAUCGuggucACGCGGu -3'
miRNA:   3'- -GCUGUu-------GCGGCGCUugUAGU-----UGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.