miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 3' -50.7 NC_005809.1 + 32700 0.67 0.873108
Target:  5'- cCGACGugcuCGCCGCGuGCAaUCAgGCgAUGGa -3'
miRNA:   3'- -GCUGUu---GCGGCGCuUGU-AGU-UG-UGCC- -5'
26829 3' -50.7 NC_005809.1 + 30026 0.67 0.873108
Target:  5'- cCGGCAagaaauucaccgACGCCGagguCGAGCAgcaccUCGACGCGc -3'
miRNA:   3'- -GCUGU------------UGCGGC----GCUUGU-----AGUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 7068 0.67 0.873108
Target:  5'- gCGGCAGCGUCGUuuGAACA--GGCugGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCG--CUUGUagUUG--UGCC- -5'
26829 3' -50.7 NC_005809.1 + 38639 0.67 0.864871
Target:  5'- -uACAACGUgaccauCGCGGACggCAGCGCGc -3'
miRNA:   3'- gcUGUUGCG------GCGCUUGuaGUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 13938 0.67 0.86487
Target:  5'- -cGCAGCGCCGUGGACuggauGCccuCGGa -3'
miRNA:   3'- gcUGUUGCGGCGCUUGuagu-UGu--GCC- -5'
26829 3' -50.7 NC_005809.1 + 15584 0.67 0.86487
Target:  5'- aCGAC-GCGCUGCGGAugcaccgcgcCAUCGGCcaggaugcugACGGu -3'
miRNA:   3'- -GCUGuUGCGGCGCUU----------GUAGUUG----------UGCC- -5'
26829 3' -50.7 NC_005809.1 + 28218 0.67 0.86487
Target:  5'- uCGGCcACGCCGaCGAcCAc--GCGCGGg -3'
miRNA:   3'- -GCUGuUGCGGC-GCUuGUaguUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 32339 0.67 0.86487
Target:  5'- cCGACAAcCGCCGCccAgGUCGcuGCGGu -3'
miRNA:   3'- -GCUGUU-GCGGCGcuUgUAGUugUGCC- -5'
26829 3' -50.7 NC_005809.1 + 29739 0.67 0.86487
Target:  5'- uCGGCcACGCCGUaGAAC-UCGGCcuCGGc -3'
miRNA:   3'- -GCUGuUGCGGCG-CUUGuAGUUGu-GCC- -5'
26829 3' -50.7 NC_005809.1 + 38078 0.67 0.86487
Target:  5'- uGugG-CGCCGCGcGCAUCcg-GCGGu -3'
miRNA:   3'- gCugUuGCGGCGCuUGUAGuugUGCC- -5'
26829 3' -50.7 NC_005809.1 + 14709 0.67 0.861503
Target:  5'- aGAUGGCGagCGCGGACAcguucuugagcagCGGCGCGGc -3'
miRNA:   3'- gCUGUUGCg-GCGCUUGUa------------GUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 40293 0.67 0.859803
Target:  5'- uCGACcGCGCggcacuguaCGCGAugAUCGacaagaagauucauuGCGCGGc -3'
miRNA:   3'- -GCUGuUGCG---------GCGCUugUAGU---------------UGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 13913 0.67 0.856374
Target:  5'- uGGCGAgGCCGCcGGCAcCGaucuggcacugcGCGCGGa -3'
miRNA:   3'- gCUGUUgCGGCGcUUGUaGU------------UGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 17018 0.67 0.856374
Target:  5'- --cCGACGCCGacauCAUCGGCuACGGg -3'
miRNA:   3'- gcuGUUGCGGCgcuuGUAGUUG-UGCC- -5'
26829 3' -50.7 NC_005809.1 + 15219 0.67 0.856374
Target:  5'- gGACGAgUGCUGCGAG-GUCGGCcCGGc -3'
miRNA:   3'- gCUGUU-GCGGCGCUUgUAGUUGuGCC- -5'
26829 3' -50.7 NC_005809.1 + 26053 0.67 0.856374
Target:  5'- gCGGCGggcgcgcuccauGCGCUcgGCGAAC-UCGGgGCGGg -3'
miRNA:   3'- -GCUGU------------UGCGG--CGCUUGuAGUUgUGCC- -5'
26829 3' -50.7 NC_005809.1 + 39659 0.67 0.856374
Target:  5'- uCGAacuCGaaCGCGAACAUCGgggcGCGCGGc -3'
miRNA:   3'- -GCUguuGCg-GCGCUUGUAGU----UGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 13761 0.67 0.856374
Target:  5'- cCGACGACGgCGCGcuggcugcucAAgAUCGGCAaccaGGg -3'
miRNA:   3'- -GCUGUUGCgGCGC----------UUgUAGUUGUg---CC- -5'
26829 3' -50.7 NC_005809.1 + 10466 0.67 0.856374
Target:  5'- uCGGCAGCgGCCa-GGGCGUugagCAACGCGGc -3'
miRNA:   3'- -GCUGUUG-CGGcgCUUGUA----GUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 4106 0.67 0.847627
Target:  5'- gGGCGGCGCugaauucguCGCGGuCGUCGGCuuCGGu -3'
miRNA:   3'- gCUGUUGCG---------GCGCUuGUAGUUGu-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.