miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 3' -50.7 NC_005809.1 + 37471 0.66 0.903325
Target:  5'- nGACcGCuGCUaaccaaGCGAACAUCAAUgcaGCGGn -3'
miRNA:   3'- gCUGuUG-CGG------CGCUUGUAGUUG---UGCC- -5'
26829 3' -50.7 NC_005809.1 + 36166 0.66 0.903325
Target:  5'- aCGACAugGgCCGCGAcuACAccgggcCGGC-CGGc -3'
miRNA:   3'- -GCUGUugC-GGCGCU--UGUa-----GUUGuGCC- -5'
26829 3' -50.7 NC_005809.1 + 23293 0.66 0.903325
Target:  5'- gCGACcACGCUguucuacgGCGAuuccaGCAUCGACGCc- -3'
miRNA:   3'- -GCUGuUGCGG--------CGCU-----UGUAGUUGUGcc -5'
26829 3' -50.7 NC_005809.1 + 7219 0.66 0.903325
Target:  5'- aCGGCAgcaucuGCGCCGCGcuCAcccUCGGCGauguCGGc -3'
miRNA:   3'- -GCUGU------UGCGGCGCuuGU---AGUUGU----GCC- -5'
26829 3' -50.7 NC_005809.1 + 19752 0.66 0.902625
Target:  5'- uCGGCAGCGCgGCGAAgucgggcCAgucCGGCACc- -3'
miRNA:   3'- -GCUGUUGCGgCGCUU-------GUa--GUUGUGcc -5'
26829 3' -50.7 NC_005809.1 + 37186 0.66 0.896192
Target:  5'- uCGGCGACGUgaGCac-CGUCAGCACGc -3'
miRNA:   3'- -GCUGUUGCGg-CGcuuGUAGUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 27766 0.66 0.896192
Target:  5'- aGGCAGCGCCGcCGAgguGCAgguuuccagCGACAUc- -3'
miRNA:   3'- gCUGUUGCGGC-GCU---UGUa--------GUUGUGcc -5'
26829 3' -50.7 NC_005809.1 + 27994 0.66 0.896192
Target:  5'- gGAUcg-GCCGCcGGCAUCAGCcCGGu -3'
miRNA:   3'- gCUGuugCGGCGcUUGUAGUUGuGCC- -5'
26829 3' -50.7 NC_005809.1 + 37012 0.66 0.896192
Target:  5'- gCGuuGGCGCCGUcGAUAcCGugGCGGg -3'
miRNA:   3'- -GCugUUGCGGCGcUUGUaGUugUGCC- -5'
26829 3' -50.7 NC_005809.1 + 2428 0.66 0.896192
Target:  5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3'
miRNA:   3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5'
26829 3' -50.7 NC_005809.1 + 28649 0.66 0.888775
Target:  5'- -cACGGCGCUGCGcGACAUCGcccugaACugGa -3'
miRNA:   3'- gcUGUUGCGGCGC-UUGUAGU------UGugCc -5'
26829 3' -50.7 NC_005809.1 + 18465 0.66 0.888775
Target:  5'- -cGCGGCGCCgGCGG-CGUCGGC-CGa -3'
miRNA:   3'- gcUGUUGCGG-CGCUuGUAGUUGuGCc -5'
26829 3' -50.7 NC_005809.1 + 34338 0.66 0.888775
Target:  5'- gCGACuuCGCCGaCGAG----GGCACGGc -3'
miRNA:   3'- -GCUGuuGCGGC-GCUUguagUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 31432 0.66 0.888775
Target:  5'- aCGGCGACGCCaCGAucugCGGCGUGGu -3'
miRNA:   3'- -GCUGUUGCGGcGCUuguaGUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 32589 0.66 0.888775
Target:  5'- cCGcCGACGCUGUGAccaagcuggcccGCGUCAAgggccgcgacgcCGCGGu -3'
miRNA:   3'- -GCuGUUGCGGCGCU------------UGUAGUU------------GUGCC- -5'
26829 3' -50.7 NC_005809.1 + 21798 0.66 0.888775
Target:  5'- gGACGugcaGCCGCGcGAUgaGUCgAGCGCGGc -3'
miRNA:   3'- gCUGUug--CGGCGC-UUG--UAG-UUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 18391 0.66 0.888775
Target:  5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3'
miRNA:   3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5'
26829 3' -50.7 NC_005809.1 + 31693 0.67 0.878716
Target:  5'- gGAauACGCCGCGcGCAUCGcgccgaccgaagccACGCaGGg -3'
miRNA:   3'- gCUguUGCGGCGCuUGUAGU--------------UGUG-CC- -5'
26829 3' -50.7 NC_005809.1 + 7068 0.67 0.873108
Target:  5'- gCGGCAGCGUCGUuuGAACA--GGCugGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCG--CUUGUagUUG--UGCC- -5'
26829 3' -50.7 NC_005809.1 + 30026 0.67 0.873108
Target:  5'- cCGGCAagaaauucaccgACGCCGagguCGAGCAgcaccUCGACGCGc -3'
miRNA:   3'- -GCUGU------------UGCGGC----GCUUGU-----AGUUGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.