miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 3' -50.7 NC_005809.1 + 8287 0.66 0.903325
Target:  5'- gGGCcACGCUGCcgGGGCAgugCAGCcaGCGGu -3'
miRNA:   3'- gCUGuUGCGGCG--CUUGUa--GUUG--UGCC- -5'
26829 3' -50.7 NC_005809.1 + 8429 0.81 0.188718
Target:  5'- gCGGgGGCGUCGCgGAACAUCGGCGCGa -3'
miRNA:   3'- -GCUgUUGCGGCG-CUUGUAGUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 8465 0.66 0.91672
Target:  5'- uCGAgGugGCCuGCGAugccGCAgcCGACGCGa -3'
miRNA:   3'- -GCUgUugCGG-CGCU----UGUa-GUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 8549 0.7 0.726893
Target:  5'- uCGACAgccGCGCCgaugGCGGGCAgcgacaggcgCGACACGa -3'
miRNA:   3'- -GCUGU---UGCGG----CGCUUGUa---------GUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 8738 0.74 0.49223
Target:  5'- cCGGCgGGCGCgGCGcuacCGUCAACAUGGa -3'
miRNA:   3'- -GCUG-UUGCGgCGCuu--GUAGUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 9209 0.7 0.693592
Target:  5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3'
miRNA:   3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 9311 0.78 0.298049
Target:  5'- uCGGCGACcugGCgGCGcACGUCGGCGCGGc -3'
miRNA:   3'- -GCUGUUG---CGgCGCuUGUAGUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 9950 0.7 0.704773
Target:  5'- gGACAGCGaCCGCG-GCGUC---GCGGc -3'
miRNA:   3'- gCUGUUGC-GGCGCuUGUAGuugUGCC- -5'
26829 3' -50.7 NC_005809.1 + 10026 0.72 0.598329
Target:  5'- gCGGCAuCGCCgGCGGcagcauccuggccgGCAUCAccagccuGCACGGg -3'
miRNA:   3'- -GCUGUuGCGG-CGCU--------------UGUAGU-------UGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 10466 0.67 0.856374
Target:  5'- uCGGCAGCgGCCa-GGGCGUugagCAACGCGGc -3'
miRNA:   3'- -GCUGUUG-CGGcgCUUGUA----GUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 10957 0.66 0.909497
Target:  5'- gCGGCGACaGCCGgGGACAcugggccaccuguUCGGCcaggcCGGa -3'
miRNA:   3'- -GCUGUUG-CGGCgCUUGU-------------AGUUGu----GCC- -5'
26829 3' -50.7 NC_005809.1 + 12415 0.69 0.759283
Target:  5'- gCGcCAACuGCCGCuGAUGUCcGACGCGGu -3'
miRNA:   3'- -GCuGUUG-CGGCGcUUGUAG-UUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 12450 0.66 0.916078
Target:  5'- cCGGCGGCGUguucuggCGCGGccuCAUCGcCugGGa -3'
miRNA:   3'- -GCUGUUGCG-------GCGCUu--GUAGUuGugCC- -5'
26829 3' -50.7 NC_005809.1 + 13761 0.67 0.856374
Target:  5'- cCGACGACGgCGCGcuggcugcucAAgAUCGGCAaccaGGg -3'
miRNA:   3'- -GCUGUUGCgGCGC----------UUgUAGUUGUg---CC- -5'
26829 3' -50.7 NC_005809.1 + 13913 0.67 0.856374
Target:  5'- uGGCGAgGCCGCcGGCAcCGaucuggcacugcGCGCGGa -3'
miRNA:   3'- gCUGUUgCGGCGcUUGUaGU------------UGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 13938 0.67 0.86487
Target:  5'- -cGCAGCGCCGUGGACuggauGCccuCGGa -3'
miRNA:   3'- gcUGUUGCGGCGCUUGuagu-UGu--GCC- -5'
26829 3' -50.7 NC_005809.1 + 14010 0.7 0.693593
Target:  5'- cCGACGugcGCGCCGCGAugGcCG--GCGGc -3'
miRNA:   3'- -GCUGU---UGCGGCGCUugUaGUugUGCC- -5'
26829 3' -50.7 NC_005809.1 + 14085 0.7 0.737807
Target:  5'- uCGGCAAUGCCgaGCGGAUGcUCGACcacuACGGc -3'
miRNA:   3'- -GCUGUUGCGG--CGCUUGU-AGUUG----UGCC- -5'
26829 3' -50.7 NC_005809.1 + 14177 0.71 0.682349
Target:  5'- uGGCGccGCGCCGCcGGCGUCgAACugGa -3'
miRNA:   3'- gCUGU--UGCGGCGcUUGUAG-UUGugCc -5'
26829 3' -50.7 NC_005809.1 + 14379 0.69 0.747533
Target:  5'- gGGCAuccGCGCCGCGGaacguagGCGUagcgaAGCugGGc -3'
miRNA:   3'- gCUGU---UGCGGCGCU-------UGUAg----UUGugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.