Results 21 - 40 of 148 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 32589 | 0.66 | 0.888775 |
Target: 5'- cCGcCGACGCUGUGAccaagcuggcccGCGUCAAgggccgcgacgcCGCGGu -3' miRNA: 3'- -GCuGUUGCGGCGCU------------UGUAGUU------------GUGCC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 31432 | 0.66 | 0.888775 |
Target: 5'- aCGGCGACGCCaCGAucugCGGCGUGGu -3' miRNA: 3'- -GCUGUUGCGGcGCUuguaGUUGUGCC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 18465 | 0.66 | 0.888775 |
Target: 5'- -cGCGGCGCCgGCGG-CGUCGGC-CGa -3' miRNA: 3'- gcUGUUGCGG-CGCUuGUAGUUGuGCc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 19752 | 0.66 | 0.902625 |
Target: 5'- uCGGCAGCGCgGCGAAgucgggcCAgucCGGCACc- -3' miRNA: 3'- -GCUGUUGCGgCGCUU-------GUa--GUUGUGcc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 21305 | 0.66 | 0.91672 |
Target: 5'- cCGACAcuuACGCCGacaugcuGGGCAUCGACccCGa -3' miRNA: 3'- -GCUGU---UGCGGCg------CUUGUAGUUGu-GCc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 33794 | 0.66 | 0.91672 |
Target: 5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3' miRNA: 3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 6439 | 0.66 | 0.91672 |
Target: 5'- gCGACAccacCGcCCGCGAagGCGUCGccgucGCGCaGGa -3' miRNA: 3'- -GCUGUu---GC-GGCGCU--UGUAGU-----UGUG-CC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 23293 | 0.66 | 0.903325 |
Target: 5'- gCGACcACGCUguucuacgGCGAuuccaGCAUCGACGCc- -3' miRNA: 3'- -GCUGuUGCGG--------CGCU-----UGUAGUUGUGcc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 18328 | 0.66 | 0.910168 |
Target: 5'- uGGCAA-GCCGCGAggACAUCAu--CGa -3' miRNA: 3'- gCUGUUgCGGCGCU--UGUAGUuguGCc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 34338 | 0.66 | 0.888775 |
Target: 5'- gCGACuuCGCCGaCGAG----GGCACGGc -3' miRNA: 3'- -GCUGuuGCGGC-GCUUguagUUGUGCC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 18391 | 0.66 | 0.888775 |
Target: 5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3' miRNA: 3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 28591 | 0.66 | 0.914785 |
Target: 5'- cCGGCAGCGUgGUGucgGUCAguuccuugaaccggGCGCGGa -3' miRNA: 3'- -GCUGUUGCGgCGCuugUAGU--------------UGUGCC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 35039 | 0.66 | 0.910168 |
Target: 5'- uCGAgcACGCCGcCGAGC----GCACGGu -3' miRNA: 3'- -GCUguUGCGGC-GCUUGuaguUGUGCC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 10957 | 0.66 | 0.909497 |
Target: 5'- gCGGCGACaGCCGgGGACAcugggccaccuguUCGGCcaggcCGGa -3' miRNA: 3'- -GCUGUUG-CGGCgCUUGU-------------AGUUGu----GCC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 27766 | 0.66 | 0.896192 |
Target: 5'- aGGCAGCGCCGcCGAgguGCAgguuuccagCGACAUc- -3' miRNA: 3'- gCUGUUGCGGC-GCU---UGUa--------GUUGUGcc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 7219 | 0.66 | 0.903325 |
Target: 5'- aCGGCAgcaucuGCGCCGCGcuCAcccUCGGCGauguCGGc -3' miRNA: 3'- -GCUGU------UGCGGCGCuuGU---AGUUGU----GCC- -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 2428 | 0.66 | 0.896192 |
Target: 5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3' miRNA: 3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 30026 | 0.67 | 0.873108 |
Target: 5'- cCGGCAagaaauucaccgACGCCGagguCGAGCAgcaccUCGACGCGc -3' miRNA: 3'- -GCUGU------------UGCGGC----GCUUGU-----AGUUGUGCc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 26506 | 0.67 | 0.847627 |
Target: 5'- -uACGGCGCCGCGcGCggCGGcCACGu -3' miRNA: 3'- gcUGUUGCGGCGCuUGuaGUU-GUGCc -5' |
|||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 4106 | 0.67 | 0.847627 |
Target: 5'- gGGCGGCGCugaauucguCGCGGuCGUCGGCuuCGGu -3' miRNA: 3'- gCUGUUGCG---------GCGCUuGUAGUUGu-GCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home