Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 24728 | 0.72 | 0.568988 |
Target: 5'- gCGACGAgGCCacggugGCGGGCAUCAACcCGc -3' miRNA: 3'- -GCUGUUgCGG------CGCUUGUAGUUGuGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 35379 | 0.72 | 0.590402 |
Target: 5'- gGACAucGCGCUGUcccggcugcgucaGGGCGUCAGCGCGu -3' miRNA: 3'- gCUGU--UGCGGCG-------------CUUGUAGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 14761 | 0.72 | 0.591533 |
Target: 5'- gGGCAGCGCgCGCGAggacgugcuGCGgcuGCGCGGc -3' miRNA: 3'- gCUGUUGCG-GCGCU---------UGUaguUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 10026 | 0.72 | 0.598329 |
Target: 5'- gCGGCAuCGCCgGCGGcagcauccuggccgGCAUCAccagccuGCACGGg -3' miRNA: 3'- -GCUGUuGCGG-CGCU--------------UGUAGU-------UGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 27502 | 0.72 | 0.602865 |
Target: 5'- cCGGCGGCcucgGCCGCcAGCuucUCGGCGCGGu -3' miRNA: 3'- -GCUGUUG----CGGCGcUUGu--AGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 22850 | 0.72 | 0.613087 |
Target: 5'- cCGACAgcgcGCGCUGCGAAUugggcugcuucugGUUcGCGCGGu -3' miRNA: 3'- -GCUGU----UGCGGCGCUUG-------------UAGuUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 29384 | 0.72 | 0.614225 |
Target: 5'- gCGuACAACGCCGgccaaGGGCGccCAGCGCGGc -3' miRNA: 3'- -GC-UGUUGCGGCg----CUUGUa-GUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 39753 | 0.71 | 0.622186 |
Target: 5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3' miRNA: 3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 37418 | 0.71 | 0.636982 |
Target: 5'- aGGCAAUGCgGCaAACAUCAACGuCGu -3' miRNA: 3'- gCUGUUGCGgCGcUUGUAGUUGU-GCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 1047 | 0.71 | 0.648359 |
Target: 5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3' miRNA: 3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 25776 | 0.71 | 0.648359 |
Target: 5'- gCGGCAACgaugGCCGCGAugcGCG-CGGCGCGc -3' miRNA: 3'- -GCUGUUG----CGGCGCU---UGUaGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 3193 | 0.71 | 0.671054 |
Target: 5'- -uGCAcACGCaCGCGGGCAuuuUCAACACGc -3' miRNA: 3'- gcUGU-UGCG-GCGCUUGU---AGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 37447 | 0.71 | 0.682349 |
Target: 5'- cCGACAACGCa--GAcaACAUCAAUGCGa -3' miRNA: 3'- -GCUGUUGCGgcgCU--UGUAGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 28881 | 0.71 | 0.682349 |
Target: 5'- gGGCAgauggACGCCGaCG-ACAUCcuCACGGu -3' miRNA: 3'- gCUGU-----UGCGGC-GCuUGUAGuuGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 24119 | 0.71 | 0.682349 |
Target: 5'- cCGcCGGCGCCGCGAcCGUCAcguuuuCGGu -3' miRNA: 3'- -GCuGUUGCGGCGCUuGUAGUugu---GCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 14177 | 0.71 | 0.682349 |
Target: 5'- uGGCGccGCGCCGCcGGCGUCgAACugGa -3' miRNA: 3'- gCUGU--UGCGGCGcUUGUAG-UUGugCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 40189 | 0.71 | 0.682349 |
Target: 5'- uGACAaggguACGCaCGCGGGCGUCugcCACGu -3' miRNA: 3'- gCUGU-----UGCG-GCGCUUGUAGuu-GUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 37113 | 0.71 | 0.682349 |
Target: 5'- aCGACcGCGgCGUGAugGUCGAUACc- -3' miRNA: 3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 9209 | 0.7 | 0.693592 |
Target: 5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3' miRNA: 3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 4197 | 0.7 | 0.693593 |
Target: 5'- gGGCAuguugGCCGCGAGCA-CGuCGCGGc -3' miRNA: 3'- gCUGUug---CGGCGCUUGUaGUuGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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