Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 37297 | 1.11 | 0.001895 |
Target: 5'- cCGACAACGCCGCGAACAUCAACACGGu -3' miRNA: 3'- -GCUGUUGCGGCGCUUGUAGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 8429 | 0.81 | 0.188718 |
Target: 5'- gCGGgGGCGUCGCgGAACAUCGGCGCGa -3' miRNA: 3'- -GCUgUUGCGGCG-CUUGUAGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 36964 | 0.81 | 0.201692 |
Target: 5'- --uCGACGCCguggcuaccaacgagGCGGACAUCGACACGGu -3' miRNA: 3'- gcuGUUGCGG---------------CGCUUGUAGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 25168 | 0.79 | 0.27568 |
Target: 5'- aCGugGGCGCCGCuGAaucgaagcgguGCGUCGGCGCGa -3' miRNA: 3'- -GCugUUGCGGCG-CU-----------UGUAGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 9311 | 0.78 | 0.298049 |
Target: 5'- uCGGCGACcugGCgGCGcACGUCGGCGCGGc -3' miRNA: 3'- -GCUGUUG---CGgCGCuUGUAGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 5803 | 0.77 | 0.330026 |
Target: 5'- gCGGCAGCGCCaGCGGAUAgUCgGGCAUGGc -3' miRNA: 3'- -GCUGUUGCGG-CGCUUGU-AG-UUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 27780 | 0.76 | 0.370738 |
Target: 5'- gGACAcguacacgaagcgcGCGCCGCGcAGCcgCAGCACGu -3' miRNA: 3'- gCUGU--------------UGCGGCGC-UUGuaGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 35447 | 0.76 | 0.37345 |
Target: 5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3' miRNA: 3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 22784 | 0.76 | 0.382587 |
Target: 5'- gGuCAACGCCcuGCGGGCcgGUCAGCAUGGu -3' miRNA: 3'- gCuGUUGCGG--CGCUUG--UAGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 15209 | 0.75 | 0.450547 |
Target: 5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3' miRNA: 3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 37507 | 0.75 | 0.450547 |
Target: 5'- uCGGCAAUGCCGacAACAUCAAUgcaGCGGu -3' miRNA: 3'- -GCUGUUGCGGCgcUUGUAGUUG---UGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 621 | 0.75 | 0.450547 |
Target: 5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3' miRNA: 3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 20867 | 0.75 | 0.450547 |
Target: 5'- aCGACGgcgcGCGCCGUGAuu-UCGAcCACGGa -3' miRNA: 3'- -GCUGU----UGCGGCGCUuguAGUU-GUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 20160 | 0.74 | 0.471155 |
Target: 5'- aGGCGugGCUgGCGAACGUCA-CGCGc -3' miRNA: 3'- gCUGUugCGG-CGCUUGUAGUuGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 4513 | 0.74 | 0.481636 |
Target: 5'- gGGCGGCGcCCGUGAACGUgGcguGCugGGc -3' miRNA: 3'- gCUGUUGC-GGCGCUUGUAgU---UGugCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 8738 | 0.74 | 0.49223 |
Target: 5'- cCGGCgGGCGCgGCGcuacCGUCAACAUGGa -3' miRNA: 3'- -GCUG-UUGCGgCGCuu--GUAGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 20913 | 0.74 | 0.49223 |
Target: 5'- uCGugGACGUgCGCGAgcGCAUCAAgGCGa -3' miRNA: 3'- -GCugUUGCG-GCGCU--UGUAGUUgUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 19476 | 0.73 | 0.513729 |
Target: 5'- cCGugGGCGCCGCcguuGGCGUCGGgGCGa -3' miRNA: 3'- -GCugUUGCGGCGc---UUGUAGUUgUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 5316 | 0.73 | 0.546662 |
Target: 5'- aGGCcguAgGCCGCGAGCAcguggcgCAGCAUGGc -3' miRNA: 3'- gCUGu--UgCGGCGCUUGUa------GUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 20759 | 0.73 | 0.557793 |
Target: 5'- aGGCGcuGCGCCGCGcucGAC-UCAucGCGCGGc -3' miRNA: 3'- gCUGU--UGCGGCGC---UUGuAGU--UGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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