Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 7307 | 0.69 | 0.748608 |
Target: 5'- gGAUGGCGCCGuCGAugGUCugcgAACGCa- -3' miRNA: 3'- gCUGUUGCGGC-GCUugUAG----UUGUGcc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 1047 | 0.71 | 0.648359 |
Target: 5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3' miRNA: 3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 25776 | 0.71 | 0.648359 |
Target: 5'- gCGGCAACgaugGCCGCGAugcGCG-CGGCGCGc -3' miRNA: 3'- -GCUGUUG----CGGCGCU---UGUaGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 37113 | 0.71 | 0.682349 |
Target: 5'- aCGACcGCGgCGUGAugGUCGAUACc- -3' miRNA: 3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 9209 | 0.7 | 0.693592 |
Target: 5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3' miRNA: 3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 28720 | 0.7 | 0.723598 |
Target: 5'- uGuCGGCGCaCGCGAggaugagcgccuugGCAUCGuccaGCGCGGu -3' miRNA: 3'- gCuGUUGCG-GCGCU--------------UGUAGU----UGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 17197 | 0.7 | 0.726892 |
Target: 5'- uGAUuuCGCCGCcgccgaagGAGCGUUgcagGACGCGGa -3' miRNA: 3'- gCUGuuGCGGCG--------CUUGUAG----UUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 41691 | 0.7 | 0.726892 |
Target: 5'- -aACAACGCgGCGGcccuCGUCGAUAgGGa -3' miRNA: 3'- gcUGUUGCGgCGCUu---GUAGUUGUgCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 14379 | 0.69 | 0.747533 |
Target: 5'- gGGCAuccGCGCCGCGGaacguagGCGUagcgaAGCugGGc -3' miRNA: 3'- gCUGU---UGCGGCGCU-------UGUAg----UUGugCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 39753 | 0.71 | 0.622186 |
Target: 5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3' miRNA: 3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 22850 | 0.72 | 0.613087 |
Target: 5'- cCGACAgcgcGCGCUGCGAAUugggcugcuucugGUUcGCGCGGu -3' miRNA: 3'- -GCUGU----UGCGGCGCUUG-------------UAGuUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 27502 | 0.72 | 0.602865 |
Target: 5'- cCGGCGGCcucgGCCGCcAGCuucUCGGCGCGGu -3' miRNA: 3'- -GCUGUUG----CGGCGcUUGu--AGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 27780 | 0.76 | 0.370738 |
Target: 5'- gGACAcguacacgaagcgcGCGCCGCGcAGCcgCAGCACGu -3' miRNA: 3'- gCUGU--------------UGCGGCGC-UUGuaGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 35447 | 0.76 | 0.37345 |
Target: 5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3' miRNA: 3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 22784 | 0.76 | 0.382587 |
Target: 5'- gGuCAACGCCcuGCGGGCcgGUCAGCAUGGu -3' miRNA: 3'- gCuGUUGCGG--CGCUUG--UAGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 621 | 0.75 | 0.450547 |
Target: 5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3' miRNA: 3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 15209 | 0.75 | 0.450547 |
Target: 5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3' miRNA: 3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 20867 | 0.75 | 0.450547 |
Target: 5'- aCGACGgcgcGCGCCGUGAuu-UCGAcCACGGa -3' miRNA: 3'- -GCUGU----UGCGGCGCUuguAGUU-GUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 4513 | 0.74 | 0.481636 |
Target: 5'- gGGCGGCGcCCGUGAACGUgGcguGCugGGc -3' miRNA: 3'- gCUGUUGC-GGCGCUUGUAgU---UGugCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 20759 | 0.73 | 0.557793 |
Target: 5'- aGGCGcuGCGCCGCGcucGAC-UCAucGCGCGGc -3' miRNA: 3'- gCUGU--UGCGGCGC---UUGuAGU--UGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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