miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 3' -50.7 NC_005809.1 + 14383 0.7 0.71477
Target:  5'- gGACAagGCGCCGCaccugcuGGGCGUgGGCAaCGGc -3'
miRNA:   3'- gCUGU--UGCGGCG-------CUUGUAgUUGU-GCC- -5'
26829 3' -50.7 NC_005809.1 + 14709 0.67 0.861503
Target:  5'- aGAUGGCGagCGCGGACAcguucuugagcagCGGCGCGGc -3'
miRNA:   3'- gCUGUUGCg-GCGCUUGUa------------GUUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 14761 0.72 0.591533
Target:  5'- gGGCAGCGCgCGCGAggacgugcuGCGgcuGCGCGGc -3'
miRNA:   3'- gCUGUUGCG-GCGCU---------UGUaguUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 15209 0.75 0.450547
Target:  5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3'
miRNA:   3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 15219 0.67 0.856374
Target:  5'- gGACGAgUGCUGCGAG-GUCGGCcCGGc -3'
miRNA:   3'- gCUGUU-GCGGCGCUUgUAGUUGuGCC- -5'
26829 3' -50.7 NC_005809.1 + 15584 0.67 0.86487
Target:  5'- aCGAC-GCGCUGCGGAugcaccgcgcCAUCGGCcaggaugcugACGGu -3'
miRNA:   3'- -GCUGuUGCGGCGCUU----------GUAGUUG----------UGCC- -5'
26829 3' -50.7 NC_005809.1 + 16419 0.68 0.807381
Target:  5'- gGACAcgGCCGCGGgguaaucgccggcgGCGUUgAACACGGc -3'
miRNA:   3'- gCUGUugCGGCGCU--------------UGUAG-UUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 16780 0.7 0.737807
Target:  5'- aCGAUAccgagcGCGCCGCGcGCAUC---GCGGc -3'
miRNA:   3'- -GCUGU------UGCGGCGCuUGUAGuugUGCC- -5'
26829 3' -50.7 NC_005809.1 + 17018 0.67 0.856374
Target:  5'- --cCGACGCCGacauCAUCGGCuACGGg -3'
miRNA:   3'- gcuGUUGCGGCgcuuGUAGUUG-UGCC- -5'
26829 3' -50.7 NC_005809.1 + 17197 0.7 0.726892
Target:  5'- uGAUuuCGCCGCcgccgaagGAGCGUUgcagGACGCGGa -3'
miRNA:   3'- gCUGuuGCGGCG--------CUUGUAG----UUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 17288 0.69 0.769817
Target:  5'- aCGAagcCGGCGCCGCGGGCGcgCAuccauuccggcAUAUGGg -3'
miRNA:   3'- -GCU---GUUGCGGCGCUUGUa-GU-----------UGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 17780 0.66 0.903325
Target:  5'- aCGGCGACuucaaCGCGGGCAUCGAgGaCGa -3'
miRNA:   3'- -GCUGUUGcg---GCGCUUGUAGUUgU-GCc -5'
26829 3' -50.7 NC_005809.1 + 17904 0.66 0.910168
Target:  5'- gGACGugGCCcgcgGCGGGCGcgaCAACACc- -3'
miRNA:   3'- gCUGUugCGG----CGCUUGUa--GUUGUGcc -5'
26829 3' -50.7 NC_005809.1 + 18328 0.66 0.910168
Target:  5'- uGGCAA-GCCGCGAggACAUCAu--CGa -3'
miRNA:   3'- gCUGUUgCGGCGCU--UGUAGUuguGCc -5'
26829 3' -50.7 NC_005809.1 + 18377 0.69 0.769817
Target:  5'- uGGCAGCGCCuacgugcucGCGcuCAUgGACACGc -3'
miRNA:   3'- gCUGUUGCGG---------CGCuuGUAgUUGUGCc -5'
26829 3' -50.7 NC_005809.1 + 18391 0.66 0.888775
Target:  5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3'
miRNA:   3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5'
26829 3' -50.7 NC_005809.1 + 18465 0.66 0.888775
Target:  5'- -cGCGGCGCCgGCGG-CGUCGGC-CGa -3'
miRNA:   3'- gcUGUUGCGG-CGCUuGUAGUUGuGCc -5'
26829 3' -50.7 NC_005809.1 + 18668 0.69 0.780201
Target:  5'- cCGGCAuggaaGCCGCGGGCGU-GGCGCa- -3'
miRNA:   3'- -GCUGUug---CGGCGCUUGUAgUUGUGcc -5'
26829 3' -50.7 NC_005809.1 + 19233 0.7 0.693593
Target:  5'- gCGGCGAgGCCGuCGAAUu---GCGCGGc -3'
miRNA:   3'- -GCUGUUgCGGC-GCUUGuaguUGUGCC- -5'
26829 3' -50.7 NC_005809.1 + 19476 0.73 0.513729
Target:  5'- cCGugGGCGCCGCcguuGGCGUCGGgGCGa -3'
miRNA:   3'- -GCugUUGCGGCGc---UUGUAGUUgUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.