miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 19836 0.67 0.734064
Target:  5'- uGCCcAgGCCGGuuuUGuUCAGCAgCGUGGUg -3'
miRNA:   3'- -CGGuUgCGGUU---GC-AGUUGUgGCACCG- -5'
26829 5' -53 NC_005809.1 + 28887 0.67 0.734064
Target:  5'- aUgGACGCCGACGaCAuccuCACgGUGcGCg -3'
miRNA:   3'- cGgUUGCGGUUGCaGUu---GUGgCAC-CG- -5'
26829 5' -53 NC_005809.1 + 28997 0.67 0.734064
Target:  5'- aGCgAugGCgAGCGcgcguUCAACaucGCCGUGGg -3'
miRNA:   3'- -CGgUugCGgUUGC-----AGUUG---UGGCACCg -5'
26829 5' -53 NC_005809.1 + 33173 0.67 0.734064
Target:  5'- aGCCcGCgGCCuGCG-CGACAUgcaGUGGCu -3'
miRNA:   3'- -CGGuUG-CGGuUGCaGUUGUGg--CACCG- -5'
26829 5' -53 NC_005809.1 + 34995 0.67 0.734064
Target:  5'- cGCCGACGaCuuCGUgGACguguccaaGCCgGUGGCg -3'
miRNA:   3'- -CGGUUGCgGuuGCAgUUG--------UGG-CACCG- -5'
26829 5' -53 NC_005809.1 + 42146 0.67 0.734064
Target:  5'- cCCAACgacaagguacgGCCGACGaUCAcCGCCGUGcuGCu -3'
miRNA:   3'- cGGUUG-----------CGGUUGC-AGUuGUGGCAC--CG- -5'
26829 5' -53 NC_005809.1 + 24046 0.67 0.734064
Target:  5'- gGCCAG-GCCAAUccCAACACCGgcaUGGa -3'
miRNA:   3'- -CGGUUgCGGUUGcaGUUGUGGC---ACCg -5'
26829 5' -53 NC_005809.1 + 41949 0.67 0.734064
Target:  5'- cGCCgGACGCCGuguCcaCGGCGCUGcUGGCc -3'
miRNA:   3'- -CGG-UUGCGGUu--GcaGUUGUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 14540 0.67 0.732982
Target:  5'- cGCCGGCGCCGgacaacaGCGaCGAgaaacccgccccUACCG-GGCu -3'
miRNA:   3'- -CGGUUGCGGU-------UGCaGUU------------GUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 40702 0.67 0.730814
Target:  5'- gGCCAGCGCCGGCcacgggcugaaccugCAAgACgGcGGCa -3'
miRNA:   3'- -CGGUUGCGGUUGca-------------GUUgUGgCaCCG- -5'
26829 5' -53 NC_005809.1 + 10545 0.67 0.729728
Target:  5'- cGCCGccACGCgCAACGgguauugcuggaaCAGCGCCucgGGCg -3'
miRNA:   3'- -CGGU--UGCG-GUUGCa------------GUUGUGGca-CCG- -5'
26829 5' -53 NC_005809.1 + 18087 0.67 0.727553
Target:  5'- cGCCGAaGCCGGCG-CGaaccaggacgccuucGCGCCGUccGGUa -3'
miRNA:   3'- -CGGUUgCGGUUGCaGU---------------UGUGGCA--CCG- -5'
26829 5' -53 NC_005809.1 + 6611 0.67 0.723192
Target:  5'- uGUCGAUGaCCAGCGg--GCG-CGUGGCg -3'
miRNA:   3'- -CGGUUGC-GGUUGCaguUGUgGCACCG- -5'
26829 5' -53 NC_005809.1 + 38873 0.67 0.723192
Target:  5'- cGCCGcauGgGgCAGCG-CGuCGCCGUGGUg -3'
miRNA:   3'- -CGGU---UgCgGUUGCaGUuGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 18466 0.67 0.723192
Target:  5'- -gCGGCGCCGgcgGCGUCGGCcgauucguccACCGUGa- -3'
miRNA:   3'- cgGUUGCGGU---UGCAGUUG----------UGGCACcg -5'
26829 5' -53 NC_005809.1 + 40478 0.67 0.723192
Target:  5'- cGUCAuuggGCGCgcuaCAugGaCGACAUCGUGGUg -3'
miRNA:   3'- -CGGU----UGCG----GUugCaGUUGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 41521 0.67 0.723192
Target:  5'- --gGACGCCGguucGCGgCGACaugcugccgccgGCCGUGGCc -3'
miRNA:   3'- cggUUGCGGU----UGCaGUUG------------UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 3267 0.67 0.723192
Target:  5'- aGCUuccGCGCCAGauaGUCGGC-CCGUGccuuuGCg -3'
miRNA:   3'- -CGGu--UGCGGUUg--CAGUUGuGGCAC-----CG- -5'
26829 5' -53 NC_005809.1 + 22357 0.67 0.723192
Target:  5'- gGCCAACaGCCGGCcgcgggcgcuGcCAAgACCGagGGCg -3'
miRNA:   3'- -CGGUUG-CGGUUG----------CaGUUgUGGCa-CCG- -5'
26829 5' -53 NC_005809.1 + 13287 0.67 0.723192
Target:  5'- gGCCAGCaguucgucGCCuaccACGUCcaccccGACACCGgccGGCc -3'
miRNA:   3'- -CGGUUG--------CGGu---UGCAG------UUGUGGCa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.