miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 31989 0.66 0.759693
Target:  5'- cUCGACGCCAGCGUCcugugcgaaacccucGACACgcUGGa -3'
miRNA:   3'- cGGUUGCGGUUGCAG---------------UUGUGgcACCg -5'
26829 5' -53 NC_005809.1 + 4387 0.66 0.755472
Target:  5'- aGCCAgGCGCC---GUC-GCGCCG-GGCc -3'
miRNA:   3'- -CGGU-UGCGGuugCAGuUGUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 7707 0.66 0.755472
Target:  5'- gGCCGGCuuGCCGAUGaacugCAGCGCaCGcucGGCg -3'
miRNA:   3'- -CGGUUG--CGGUUGCa----GUUGUG-GCa--CCG- -5'
26829 5' -53 NC_005809.1 + 24678 0.66 0.755472
Target:  5'- cGCCGcGgGCC-ACGUCcACGCCcaGGCu -3'
miRNA:   3'- -CGGU-UgCGGuUGCAGuUGUGGcaCCG- -5'
26829 5' -53 NC_005809.1 + 19357 0.66 0.755472
Target:  5'- gGCCGAgGCCGAgGcCGAauuCACCGacgaGGCc -3'
miRNA:   3'- -CGGUUgCGGUUgCaGUU---GUGGCa---CCG- -5'
26829 5' -53 NC_005809.1 + 27996 0.66 0.755472
Target:  5'- aUCGGcCGCCGGCaUCAGC-CCGguaggGGCg -3'
miRNA:   3'- cGGUU-GCGGUUGcAGUUGuGGCa----CCG- -5'
26829 5' -53 NC_005809.1 + 28220 0.66 0.755472
Target:  5'- gGCCA-CGCCGACGaCcACGCgCG-GGUc -3'
miRNA:   3'- -CGGUuGCGGUUGCaGuUGUG-GCaCCG- -5'
26829 5' -53 NC_005809.1 + 19033 0.66 0.755472
Target:  5'- gGCCGAgGCCAucgaccGCGU--GCGCCGccuggaaGGCg -3'
miRNA:   3'- -CGGUUgCGGU------UGCAguUGUGGCa------CCG- -5'
26829 5' -53 NC_005809.1 + 41435 0.66 0.755472
Target:  5'- cGCCGuagcgcgaGCUAACGguuACACCG-GGCc -3'
miRNA:   3'- -CGGUug------CGGUUGCaguUGUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 5239 0.67 0.744829
Target:  5'- cGCCAcgguguugACGUUGGCGUUGGCACC--GGCc -3'
miRNA:   3'- -CGGU--------UGCGGUUGCAGUUGUGGcaCCG- -5'
26829 5' -53 NC_005809.1 + 7622 0.67 0.744829
Target:  5'- cGCgCAGCGCCGGacaCGugGCCuUGGCc -3'
miRNA:   3'- -CG-GUUGCGGUUgcaGUugUGGcACCG- -5'
26829 5' -53 NC_005809.1 + 13764 0.67 0.744829
Target:  5'- uCCAGCGCCGACaUgAGCGCaaucuuGUGcGCg -3'
miRNA:   3'- cGGUUGCGGUUGcAgUUGUGg-----CAC-CG- -5'
26829 5' -53 NC_005809.1 + 14856 0.67 0.744829
Target:  5'- gGCCAGCGCCGcACGcUgGGCGCCuuuaaGUugcccGGCu -3'
miRNA:   3'- -CGGUUGCGGU-UGC-AgUUGUGG-----CA-----CCG- -5'
26829 5' -53 NC_005809.1 + 37977 0.67 0.744829
Target:  5'- cGCCGAgGCCGAgcaGUUccuCGCC-UGGCg -3'
miRNA:   3'- -CGGUUgCGGUUg--CAGuu-GUGGcACCG- -5'
26829 5' -53 NC_005809.1 + 3731 0.67 0.744829
Target:  5'- uGCCGuucACGCCGguggugggcACGUCggUGCCGccGCu -3'
miRNA:   3'- -CGGU---UGCGGU---------UGCAGuuGUGGCacCG- -5'
26829 5' -53 NC_005809.1 + 41956 0.67 0.744829
Target:  5'- cGCCGAgGCUGAgGcCAucauCGCCGacaUGGCg -3'
miRNA:   3'- -CGGUUgCGGUUgCaGUu---GUGGC---ACCG- -5'
26829 5' -53 NC_005809.1 + 35393 0.67 0.744829
Target:  5'- cCCGgcuGCGUCAggGCGUCAGCGCguCG-GGCc -3'
miRNA:   3'- cGGU---UGCGGU--UGCAGUUGUG--GCaCCG- -5'
26829 5' -53 NC_005809.1 + 11428 0.67 0.743757
Target:  5'- aGCCGGCGUgCAggucgccgauaagGCG-CGACACCGgcagcuuuucagUGGCg -3'
miRNA:   3'- -CGGUUGCG-GU-------------UGCaGUUGUGGC------------ACCG- -5'
26829 5' -53 NC_005809.1 + 28887 0.67 0.734064
Target:  5'- aUgGACGCCGACGaCAuccuCACgGUGcGCg -3'
miRNA:   3'- cGgUUGCGGUUGCaGUu---GUGgCAC-CG- -5'
26829 5' -53 NC_005809.1 + 13367 0.67 0.734064
Target:  5'- cGCCAugcgcGCGuCCGACcugccgGUCAuCACCGaGGCc -3'
miRNA:   3'- -CGGU-----UGC-GGUUG------CAGUuGUGGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.