Results 21 - 40 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 5' | -53 | NC_005809.1 | + | 16040 | 0.66 | 0.777377 |
Target: 5'- gGgCGGCGCCAugcugaaaACCGUGGCg -3' miRNA: 3'- -CgGUUGCGGUugcaguugUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 9437 | 0.66 | 0.776349 |
Target: 5'- -aUAGCGUCGuuggucGCGUCcACGCCGagGGCc -3' miRNA: 3'- cgGUUGCGGU------UGCAGuUGUGGCa-CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 17488 | 0.66 | 0.776349 |
Target: 5'- -aCGGCGCCGggcGCG-CuGCGCUggGUGGCg -3' miRNA: 3'- cgGUUGCGGU---UGCaGuUGUGG--CACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 30129 | 0.66 | 0.776349 |
Target: 5'- cGCCAgaacACGCCGccggccugcaccGCGUCGgACAUCaGcGGCa -3' miRNA: 3'- -CGGU----UGCGGU------------UGCAGU-UGUGG-CaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 10820 | 0.66 | 0.776349 |
Target: 5'- uGCCcAUGUCAauGCGUCAGCGCauauuuuuaGGCg -3' miRNA: 3'- -CGGuUGCGGU--UGCAGUUGUGgca------CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33226 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33322 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCg -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 398 | 0.66 | 0.776349 |
Target: 5'- gGCCAGCGCgCGACuguugagCAGCACguCGcgGGCc -3' miRNA: 3'- -CGGUUGCG-GUUGca-----GUUGUG--GCa-CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33370 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33466 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 34133 | 0.66 | 0.776349 |
Target: 5'- cGCCGacaucGCGCCGAUGUuccgCGACGCCcccGCg -3' miRNA: 3'- -CGGU-----UGCGGUUGCA----GUUGUGGcacCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 19878 | 0.66 | 0.776349 |
Target: 5'- uGCCGaagGCGUCGcGCGcCuuCuugGCCGUGGCa -3' miRNA: 3'- -CGGU---UGCGGU-UGCaGuuG---UGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33930 | 0.66 | 0.776349 |
Target: 5'- cGCCGAUgaagGCCGGCGaccUCGcCACCGcagcGGCc -3' miRNA: 3'- -CGGUUG----CGGUUGC---AGUuGUGGCa---CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 12996 | 0.66 | 0.773256 |
Target: 5'- cGCC--CGCCGuucucguacaggccGCG-CAGCGCaGUGGCg -3' miRNA: 3'- -CGGuuGCGGU--------------UGCaGUUGUGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 14348 | 0.66 | 0.765983 |
Target: 5'- uCCGAccCGCgCGugGUCGuCGgCGUGGCc -3' miRNA: 3'- cGGUU--GCG-GUugCAGUuGUgGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33184 | 0.66 | 0.765983 |
Target: 5'- aGUgGGCGCCcuCGgcaCGGcCACCGcUGGCg -3' miRNA: 3'- -CGgUUGCGGuuGCa--GUU-GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 17241 | 0.66 | 0.765983 |
Target: 5'- gGCCGGCcuggacaaucCCGGCGaCgAGCGCCgGUGGCa -3' miRNA: 3'- -CGGUUGc---------GGUUGCaG-UUGUGG-CACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 24111 | 0.66 | 0.765983 |
Target: 5'- gGCCGACGCCGccgGCGcCGcgACCGUcacguuuucGGUg -3' miRNA: 3'- -CGGUUGCGGU---UGCaGUugUGGCA---------CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 8966 | 0.66 | 0.764938 |
Target: 5'- uGCCGuaauUGCCAGCGUggccgugccgcgaUAGCcaGCgGUGGCc -3' miRNA: 3'- -CGGUu---GCGGUUGCA-------------GUUG--UGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 31989 | 0.66 | 0.759693 |
Target: 5'- cUCGACGCCAGCGUCcugugcgaaacccucGACACgcUGGa -3' miRNA: 3'- cGGUUGCGGUUGCAG---------------UUGUGgcACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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