miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 8966 0.66 0.764938
Target:  5'- uGCCGuaauUGCCAGCGUggccgugccgcgaUAGCcaGCgGUGGCc -3'
miRNA:   3'- -CGGUu---GCGGUUGCA-------------GUUG--UGgCACCG- -5'
26829 5' -53 NC_005809.1 + 24111 0.66 0.765983
Target:  5'- gGCCGACGCCGccgGCGcCGcgACCGUcacguuuucGGUg -3'
miRNA:   3'- -CGGUUGCGGU---UGCaGUugUGGCA---------CCG- -5'
26829 5' -53 NC_005809.1 + 7707 0.66 0.755472
Target:  5'- gGCCGGCuuGCCGAUGaacugCAGCGCaCGcucGGCg -3'
miRNA:   3'- -CGGUUG--CGGUUGCa----GUUGUG-GCa--CCG- -5'
26829 5' -53 NC_005809.1 + 12996 0.66 0.773256
Target:  5'- cGCC--CGCCGuucucguacaggccGCG-CAGCGCaGUGGCg -3'
miRNA:   3'- -CGGuuGCGGU--------------UGCaGUUGUGgCACCG- -5'
26829 5' -53 NC_005809.1 + 37464 0.66 0.786558
Target:  5'- -aCGGCGCCAGCc---GCACCGgacgcugGGCc -3'
miRNA:   3'- cgGUUGCGGUUGcaguUGUGGCa------CCG- -5'
26829 5' -53 NC_005809.1 + 33322 0.66 0.776349
Target:  5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCg -3'
miRNA:   3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 33370 0.66 0.776349
Target:  5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3'
miRNA:   3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 17241 0.66 0.765983
Target:  5'- gGCCGGCcuggacaaucCCGGCGaCgAGCGCCgGUGGCa -3'
miRNA:   3'- -CGGUUGc---------GGUUGCaG-UUGUGG-CACCG- -5'
26829 5' -53 NC_005809.1 + 28220 0.66 0.755472
Target:  5'- gGCCA-CGCCGACGaCcACGCgCG-GGUc -3'
miRNA:   3'- -CGGUuGCGGUUGCaGuUGUG-GCaCCG- -5'
26829 5' -53 NC_005809.1 + 33226 0.66 0.776349
Target:  5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3'
miRNA:   3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 24678 0.66 0.755472
Target:  5'- cGCCGcGgGCC-ACGUCcACGCCcaGGCu -3'
miRNA:   3'- -CGGU-UgCGGuUGCAGuUGUGGcaCCG- -5'
26829 5' -53 NC_005809.1 + 9437 0.66 0.776349
Target:  5'- -aUAGCGUCGuuggucGCGUCcACGCCGagGGCc -3'
miRNA:   3'- cgGUUGCGGU------UGCAGuUGUGGCa-CCG- -5'
26829 5' -53 NC_005809.1 + 14348 0.66 0.765983
Target:  5'- uCCGAccCGCgCGugGUCGuCGgCGUGGCc -3'
miRNA:   3'- cGGUU--GCG-GUugCAGUuGUgGCACCG- -5'
26829 5' -53 NC_005809.1 + 19878 0.66 0.776349
Target:  5'- uGCCGaagGCGUCGcGCGcCuuCuugGCCGUGGCa -3'
miRNA:   3'- -CGGU---UGCGGU-UGCaGuuG---UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 34133 0.66 0.776349
Target:  5'- cGCCGacaucGCGCCGAUGUuccgCGACGCCcccGCg -3'
miRNA:   3'- -CGGU-----UGCGGUUGCA----GUUGUGGcacCG- -5'
26829 5' -53 NC_005809.1 + 33184 0.66 0.765983
Target:  5'- aGUgGGCGCCcuCGgcaCGGcCACCGcUGGCg -3'
miRNA:   3'- -CGgUUGCGGuuGCa--GUU-GUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 33466 0.66 0.776349
Target:  5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3'
miRNA:   3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 30129 0.66 0.776349
Target:  5'- cGCCAgaacACGCCGccggccugcaccGCGUCGgACAUCaGcGGCa -3'
miRNA:   3'- -CGGU----UGCGGU------------UGCAGU-UGUGG-CaCCG- -5'
26829 5' -53 NC_005809.1 + 24516 0.66 0.785545
Target:  5'- cGCCcACGCCGaucACGUCcagguggAugACCGcgUGGUc -3'
miRNA:   3'- -CGGuUGCGGU---UGCAG-------UugUGGC--ACCG- -5'
26829 5' -53 NC_005809.1 + 3885 0.66 0.786558
Target:  5'- gGCC-GCGCUGcCGUCGcCGCCGaacuUGGUa -3'
miRNA:   3'- -CGGuUGCGGUuGCAGUuGUGGC----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.