Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 5' | -53 | NC_005809.1 | + | 12996 | 0.66 | 0.773256 |
Target: 5'- cGCC--CGCCGuucucguacaggccGCG-CAGCGCaGUGGCg -3' miRNA: 3'- -CGGuuGCGGU--------------UGCaGUUGUGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37464 | 0.66 | 0.786558 |
Target: 5'- -aCGGCGCCAGCc---GCACCGgacgcugGGCc -3' miRNA: 3'- cgGUUGCGGUUGcaguUGUGGCa------CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 32320 | 0.66 | 0.786558 |
Target: 5'- cGCCAucaAgGCCGGCGUCccGACaACCGccGCc -3' miRNA: 3'- -CGGU---UgCGGUUGCAG--UUG-UGGCacCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 19878 | 0.66 | 0.776349 |
Target: 5'- uGCCGaagGCGUCGcGCGcCuuCuugGCCGUGGCa -3' miRNA: 3'- -CGGU---UGCGGU-UGCaGuuG---UGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 41072 | 0.66 | 0.786558 |
Target: 5'- gGgCAACGUCAucaaguACGUgAGC-CgGUGGCg -3' miRNA: 3'- -CgGUUGCGGU------UGCAgUUGuGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 27019 | 0.66 | 0.806456 |
Target: 5'- -aCGGCGCCAuugaccuggACGUggaggcCGGCACCGUG-Ca -3' miRNA: 3'- cgGUUGCGGU---------UGCA------GUUGUGGCACcG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 30129 | 0.66 | 0.776349 |
Target: 5'- cGCCAgaacACGCCGccggccugcaccGCGUCGgACAUCaGcGGCa -3' miRNA: 3'- -CGGU----UGCGGU------------UGCAGU-UGUGG-CaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 9437 | 0.66 | 0.776349 |
Target: 5'- -aUAGCGUCGuuggucGCGUCcACGCCGagGGCc -3' miRNA: 3'- cgGUUGCGGU------UGCAGuUGUGGCa-CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33322 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCg -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 28220 | 0.66 | 0.755472 |
Target: 5'- gGCCA-CGCCGACGaCcACGCgCG-GGUc -3' miRNA: 3'- -CGGUuGCGGUUGCaGuUGUG-GCaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 24678 | 0.66 | 0.755472 |
Target: 5'- cGCCGcGgGCC-ACGUCcACGCCcaGGCu -3' miRNA: 3'- -CGGU-UgCGGuUGCAGuUGUGGcaCCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 31989 | 0.66 | 0.759693 |
Target: 5'- cUCGACGCCAGCGUCcugugcgaaacccucGACACgcUGGa -3' miRNA: 3'- cGGUUGCGGUUGCAG---------------UUGUGgcACCg -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 3885 | 0.66 | 0.786558 |
Target: 5'- gGCC-GCGCUGcCGUCGcCGCCGaacuUGGUa -3' miRNA: 3'- -CGGuUGCGGUuGCAGUuGUGGC----ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33184 | 0.66 | 0.765983 |
Target: 5'- aGUgGGCGCCcuCGgcaCGGcCACCGcUGGCg -3' miRNA: 3'- -CGgUUGCGGuuGCa--GUU-GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33370 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33466 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 7741 | 0.66 | 0.786558 |
Target: 5'- uGCCAuuccuGCGCaguCAGCGauugCAGCACCG-GcGCg -3' miRNA: 3'- -CGGU-----UGCG---GUUGCa---GUUGUGGCaC-CG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 24516 | 0.66 | 0.785545 |
Target: 5'- cGCCcACGCCGaucACGUCcagguggAugACCGcgUGGUc -3' miRNA: 3'- -CGGuUGCGGU---UGCAG-------UugUGGC--ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 34133 | 0.66 | 0.776349 |
Target: 5'- cGCCGacaucGCGCCGAUGUuccgCGACGCCcccGCg -3' miRNA: 3'- -CGGU-----UGCGGUUGCA----GUUGUGGcacCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 33226 | 0.66 | 0.776349 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCa -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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