miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 25662 0.73 0.400149
Target:  5'- uGCCGGCGUCAuguACGUCAucaGCCGgcggauuucGGCa -3'
miRNA:   3'- -CGGUUGCGGU---UGCAGUug-UGGCa--------CCG- -5'
26829 5' -53 NC_005809.1 + 5620 0.74 0.337802
Target:  5'- aGCCAcgGCGUCGAUGUUGGCGagGUGGCc -3'
miRNA:   3'- -CGGU--UGCGGUUGCAGUUGUggCACCG- -5'
26829 5' -53 NC_005809.1 + 38460 0.74 0.337802
Target:  5'- aGCCGACGaCCGcgACGaauUCAGCGCCGcccaccUGGCc -3'
miRNA:   3'- -CGGUUGC-GGU--UGC---AGUUGUGGC------ACCG- -5'
26829 5' -53 NC_005809.1 + 41843 0.74 0.346262
Target:  5'- gGUCAucCGCCAgGCGcUCGACuugGCCGUGGCc -3'
miRNA:   3'- -CGGUu-GCGGU-UGC-AGUUG---UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 6676 0.74 0.346262
Target:  5'- cGCC-ACGCCGAUGuUCAGgGCCGUGu- -3'
miRNA:   3'- -CGGuUGCGGUUGC-AGUUgUGGCACcg -5'
26829 5' -53 NC_005809.1 + 37597 0.74 0.349688
Target:  5'- cGCCAACGUCAugGaacugaccagCAgcgcgauacgcggcuGCAUCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUugCa---------GU---------------UGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 2206 0.73 0.363634
Target:  5'- uGCCGACGCCcuCGUCGgguagcaccacGCGCagcaggcggcgCGUGGCc -3'
miRNA:   3'- -CGGUUGCGGuuGCAGU-----------UGUG-----------GCACCG- -5'
26829 5' -53 NC_005809.1 + 18389 0.73 0.372543
Target:  5'- uGCCGaugGCGCCGguggcggccACGUCGGCGaagGUGGCg -3'
miRNA:   3'- -CGGU---UGCGGU---------UGCAGUUGUgg-CACCG- -5'
26829 5' -53 NC_005809.1 + 35222 0.73 0.400149
Target:  5'- -aCGACGCCGAgGUCGAgGCCGcgcucaaGGCc -3'
miRNA:   3'- cgGUUGCGGUUgCAGUUgUGGCa------CCG- -5'
26829 5' -53 NC_005809.1 + 25085 0.74 0.329493
Target:  5'- cCCAGCGCagcGCGccCGGCGCCGUGGg -3'
miRNA:   3'- cGGUUGCGgu-UGCa-GUUGUGGCACCg -5'
26829 5' -53 NC_005809.1 + 36039 0.74 0.321335
Target:  5'- cGUCAACGCCAGCaUCGA-ACUGUGGg -3'
miRNA:   3'- -CGGUUGCGGUUGcAGUUgUGGCACCg -5'
26829 5' -53 NC_005809.1 + 35824 0.75 0.305477
Target:  5'- cGCCAaggaaaagugggGCGCCAAgGcCGACGCCGUGcucaaGCa -3'
miRNA:   3'- -CGGU------------UGCGGUUgCaGUUGUGGCAC-----CG- -5'
26829 5' -53 NC_005809.1 + 23096 0.81 0.127509
Target:  5'- cCCGACGCCAACGgCGGCGCCcacGGCg -3'
miRNA:   3'- cGGUUGCGGUUGCaGUUGUGGca-CCG- -5'
26829 5' -53 NC_005809.1 + 4255 0.79 0.169272
Target:  5'- aGUCggUGCCGGcCGUCAGCGCCGgcaUGGUg -3'
miRNA:   3'- -CGGuuGCGGUU-GCAGUUGUGGC---ACCG- -5'
26829 5' -53 NC_005809.1 + 14828 0.78 0.194459
Target:  5'- uGCCuuCGCCcAgGUCGAUGCCGuUGGCg -3'
miRNA:   3'- -CGGuuGCGGuUgCAGUUGUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 28864 0.77 0.222865
Target:  5'- cCCAGCGCCGcgccACGUCcuCGCUGcUGGCg -3'
miRNA:   3'- cGGUUGCGGU----UGCAGuuGUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 18270 0.77 0.235182
Target:  5'- cGCCGAgaacuUGCCGGcCGUCAGCggGCCgGUGGCg -3'
miRNA:   3'- -CGGUU-----GCGGUU-GCAGUUG--UGG-CACCG- -5'
26829 5' -53 NC_005809.1 + 23760 0.76 0.254723
Target:  5'- uGCCGGCGCCAcCGggccgauGCGCCGcGGCu -3'
miRNA:   3'- -CGGUUGCGGUuGCagu----UGUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 13306 0.75 0.305477
Target:  5'- cGCCGGgGCCGGCGUUguaGGCGgCGUaGGCu -3'
miRNA:   3'- -CGGUUgCGGUUGCAG---UUGUgGCA-CCG- -5'
26829 5' -53 NC_005809.1 + 14977 0.75 0.305477
Target:  5'- cGCCGGuCGCCAgaaugGCGUCGGCAU--UGGCg -3'
miRNA:   3'- -CGGUU-GCGGU-----UGCAGUUGUGgcACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.