Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 5' | -53 | NC_005809.1 | + | 37331 | 1.15 | 0.000541 |
Target: 5'- uGCCAACGCCAACGUCAACACCGUGGCg -3' miRNA: 3'- -CGGUUGCGGUUGCAGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 36948 | 0.92 | 0.023402 |
Target: 5'- gGCCAccuCGCCAACaUCGACGCCGUGGCu -3' miRNA: 3'- -CGGUu--GCGGUUGcAGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37007 | 0.89 | 0.036845 |
Target: 5'- gGCCAGCGUUGGCGccgUCGAUACCGUGGCg -3' miRNA: 3'- -CGGUUGCGGUUGC---AGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 34567 | 0.87 | 0.04976 |
Target: 5'- aGCUGGCGCCAagggcACGUcCGACGCCGUGGUg -3' miRNA: 3'- -CGGUUGCGGU-----UGCA-GUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37260 | 0.86 | 0.057778 |
Target: 5'- uCCGugGCCGGCGaccuggaaaauaUCGACGCCGUGGCc -3' miRNA: 3'- cGGUugCGGUUGC------------AGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 23096 | 0.81 | 0.127509 |
Target: 5'- cCCGACGCCAACGgCGGCGCCcacGGCg -3' miRNA: 3'- cGGUUGCGGUUGCaGUUGUGGca-CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 41897 | 0.81 | 0.131214 |
Target: 5'- gGCCGGCGCCGcCGUaGGCGCCugGUGGCu -3' miRNA: 3'- -CGGUUGCGGUuGCAgUUGUGG--CACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 24918 | 0.8 | 0.138923 |
Target: 5'- cGCCGACGCCA---UCAAgAUCGUGGCc -3' miRNA: 3'- -CGGUUGCGGUugcAGUUgUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 4656 | 0.8 | 0.151266 |
Target: 5'- gGCCAucGCGUCAAgGUCGAUGCCGUaGGUa -3' miRNA: 3'- -CGGU--UGCGGUUgCAGUUGUGGCA-CCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 4255 | 0.79 | 0.169272 |
Target: 5'- aGUCggUGCCGGcCGUCAGCGCCGgcaUGGUg -3' miRNA: 3'- -CGGuuGCGGUU-GCAGUUGUGGC---ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 14828 | 0.78 | 0.194459 |
Target: 5'- uGCCuuCGCCcAgGUCGAUGCCGuUGGCg -3' miRNA: 3'- -CGGuuGCGGuUgCAGUUGUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37662 | 0.78 | 0.199875 |
Target: 5'- aUCGcUGCCGACGUUucCACCGUGGCc -3' miRNA: 3'- cGGUuGCGGUUGCAGuuGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 27583 | 0.78 | 0.205421 |
Target: 5'- uGgCAACGCCAAUGcCGACGCCauucUGGCg -3' miRNA: 3'- -CgGUUGCGGUUGCaGUUGUGGc---ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37229 | 0.77 | 0.216914 |
Target: 5'- gGCUGuCGCCAACGacaUCGACAgCGUGGUa -3' miRNA: 3'- -CGGUuGCGGUUGC---AGUUGUgGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 28864 | 0.77 | 0.222865 |
Target: 5'- cCCAGCGCCGcgccACGUCcuCGCUGcUGGCg -3' miRNA: 3'- cGGUUGCGGU----UGCAGuuGUGGC-ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 18270 | 0.77 | 0.235182 |
Target: 5'- cGCCGAgaacuUGCCGGcCGUCAGCggGCCgGUGGCg -3' miRNA: 3'- -CGGUU-----GCGGUU-GCAGUUG--UGG-CACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 21956 | 0.76 | 0.241552 |
Target: 5'- aGCCGACaCCGACcugCGACGCCGccUGGCg -3' miRNA: 3'- -CGGUUGcGGUUGca-GUUGUGGC--ACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 37300 | 0.76 | 0.241552 |
Target: 5'- -aCAACGCCGcgaACaUCAACACgGUGGCc -3' miRNA: 3'- cgGUUGCGGU---UGcAGUUGUGgCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 20266 | 0.76 | 0.248066 |
Target: 5'- gGCCAGCagcaucgugcuGcCCGACuUCGACGCCGUGGUc -3' miRNA: 3'- -CGGUUG-----------C-GGUUGcAGUUGUGGCACCG- -5' |
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26829 | 5' | -53 | NC_005809.1 | + | 23760 | 0.76 | 0.254723 |
Target: 5'- uGCCGGCGCCAcCGggccgauGCGCCGcGGCu -3' miRNA: 3'- -CGGUUGCGGUuGCagu----UGUGGCaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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