miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 174 0.72 0.429026
Target:  5'- uGCCGcgcgcagaAUGCCGGCGUCAucccCGCCaucagcaucaugGUGGCg -3'
miRNA:   3'- -CGGU--------UGCGGUUGCAGUu---GUGG------------CACCG- -5'
26829 5' -53 NC_005809.1 + 398 0.66 0.776349
Target:  5'- gGCCAGCGCgCGACuguugagCAGCACguCGcgGGCc -3'
miRNA:   3'- -CGGUUGCG-GUUGca-----GUUGUG--GCa-CCG- -5'
26829 5' -53 NC_005809.1 + 605 0.69 0.611211
Target:  5'- cGCCugcGgGUCGGCcagCAGCGCCGUGGa -3'
miRNA:   3'- -CGGu--UgCGGUUGca-GUUGUGGCACCg -5'
26829 5' -53 NC_005809.1 + 671 0.71 0.500852
Target:  5'- aGCCAccaggcCGCCuACGgCGGCGCCGgccgGGCc -3'
miRNA:   3'- -CGGUu-----GCGGuUGCaGUUGUGGCa---CCG- -5'
26829 5' -53 NC_005809.1 + 722 0.69 0.611211
Target:  5'- gGCCAcgGCCAA-GUCgAGCGCC-UGGCg -3'
miRNA:   3'- -CGGUugCGGUUgCAG-UUGUGGcACCG- -5'
26829 5' -53 NC_005809.1 + 1002 0.67 0.712225
Target:  5'- uGCCGugGUucaccgCAGCGUCgAACACC-UGGa -3'
miRNA:   3'- -CGGUugCG------GUUGCAG-UUGUGGcACCg -5'
26829 5' -53 NC_005809.1 + 1005 0.7 0.565223
Target:  5'- uGCCcGCGCCAcuggccgggaaauAC-UCGGCcaugcugaacguGCCGUGGCg -3'
miRNA:   3'- -CGGuUGCGGU-------------UGcAGUUG------------UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 1330 0.68 0.690053
Target:  5'- gGCCGACaagcgcgaggaaGCCGugGUCGGCgGCCuUGcGCa -3'
miRNA:   3'- -CGGUUG------------CGGUugCAGUUG-UGGcAC-CG- -5'
26829 5' -53 NC_005809.1 + 1708 0.67 0.723192
Target:  5'- cGCCGugGgCCGGCGU----GCCGgcgagGGCg -3'
miRNA:   3'- -CGGUugC-GGUUGCAguugUGGCa----CCG- -5'
26829 5' -53 NC_005809.1 + 1757 0.69 0.633801
Target:  5'- gGUCAugGCCGGCcu--GCGCC-UGGCg -3'
miRNA:   3'- -CGGUugCGGUUGcaguUGUGGcACCG- -5'
26829 5' -53 NC_005809.1 + 1845 0.68 0.656385
Target:  5'- aGCCAGgauguUGCCGcCGUCuuGCAgguucagcCCGUGGCc -3'
miRNA:   3'- -CGGUU-----GCGGUuGCAGu-UGU--------GGCACCG- -5'
26829 5' -53 NC_005809.1 + 2096 0.69 0.633801
Target:  5'- gGCCcaggugguCGCCGuguCGUCGguauagauuGCGCCGuUGGCg -3'
miRNA:   3'- -CGGuu------GCGGUu--GCAGU---------UGUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 2206 0.73 0.363634
Target:  5'- uGCCGACGCCcuCGUCGgguagcaccacGCGCagcaggcggcgCGUGGCc -3'
miRNA:   3'- -CGGUUGCGGuuGCAGU-----------UGUG-----------GCACCG- -5'
26829 5' -53 NC_005809.1 + 2837 0.67 0.701175
Target:  5'- gGCCA-CGCgCAGCGgcgcCAGCACCagcgaggGGCc -3'
miRNA:   3'- -CGGUuGCG-GUUGCa---GUUGUGGca-----CCG- -5'
26829 5' -53 NC_005809.1 + 3267 0.67 0.723192
Target:  5'- aGCUuccGCGCCAGauaGUCGGC-CCGUGccuuuGCg -3'
miRNA:   3'- -CGGu--UGCGGUUg--CAGUUGuGGCAC-----CG- -5'
26829 5' -53 NC_005809.1 + 3679 0.7 0.576375
Target:  5'- uGCaCAACGCCccacuugGACGUgAagauguuccacGCGCuCGUGGCg -3'
miRNA:   3'- -CG-GUUGCGG-------UUGCAgU-----------UGUG-GCACCG- -5'
26829 5' -53 NC_005809.1 + 3731 0.67 0.744829
Target:  5'- uGCCGuucACGCCGguggugggcACGUCggUGCCGccGCu -3'
miRNA:   3'- -CGGU---UGCGGU---------UGCAGuuGUGGCacCG- -5'
26829 5' -53 NC_005809.1 + 3795 0.71 0.479751
Target:  5'- aGCCAGCGCCuggaauuCGUUguaguugggcaGGCgcuuGCCGUGGUg -3'
miRNA:   3'- -CGGUUGCGGuu-----GCAG-----------UUG----UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 3885 0.66 0.786558
Target:  5'- gGCC-GCGCUGcCGUCGcCGCCGaacuUGGUa -3'
miRNA:   3'- -CGGuUGCGGUuGCAGUuGUGGC----ACCG- -5'
26829 5' -53 NC_005809.1 + 4018 0.69 0.604445
Target:  5'- cGCCGGCcaCCAGCGUCAugccgcgcgggucgaGCgcaGCCG-GGCg -3'
miRNA:   3'- -CGGUUGc-GGUUGCAGU---------------UG---UGGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.