miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 4156 0.69 0.622501
Target:  5'- aGCCGcccaccuugcGCGCCGugGUCGAgguguaGCCaGUGGg -3'
miRNA:   3'- -CGGU----------UGCGGUugCAGUUg-----UGG-CACCg -5'
26829 5' -53 NC_005809.1 + 4255 0.79 0.169272
Target:  5'- aGUCggUGCCGGcCGUCAGCGCCGgcaUGGUg -3'
miRNA:   3'- -CGGuuGCGGUU-GCAGUUGUGGC---ACCG- -5'
26829 5' -53 NC_005809.1 + 4387 0.66 0.755472
Target:  5'- aGCCAgGCGCC---GUC-GCGCCG-GGCc -3'
miRNA:   3'- -CGGU-UGCGGuugCAGuUGUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 4436 0.7 0.522352
Target:  5'- cGCCAGggggaagcCGCCAGCGgUGGCACCGUcauGCa -3'
miRNA:   3'- -CGGUU--------GCGGUUGCaGUUGUGGCAc--CG- -5'
26829 5' -53 NC_005809.1 + 4656 0.8 0.151266
Target:  5'- gGCCAucGCGUCAAgGUCGAUGCCGUaGGUa -3'
miRNA:   3'- -CGGU--UGCGGUUgCAGUUGUGGCA-CCG- -5'
26829 5' -53 NC_005809.1 + 4829 0.7 0.555235
Target:  5'- gGCCGGCGCCGuCGUCGAauuCACgGaaagcGGCc -3'
miRNA:   3'- -CGGUUGCGGUuGCAGUU---GUGgCa----CCG- -5'
26829 5' -53 NC_005809.1 + 5101 0.7 0.577493
Target:  5'- gGCCGGC-CCAGCGUCcgguGCGgC-UGGCg -3'
miRNA:   3'- -CGGUUGcGGUUGCAGu---UGUgGcACCG- -5'
26829 5' -53 NC_005809.1 + 5179 0.67 0.712225
Target:  5'- uGCCAcCGCCugcacguCGUCGAUAUUGccGGCu -3'
miRNA:   3'- -CGGUuGCGGuu-----GCAGUUGUGGCa-CCG- -5'
26829 5' -53 NC_005809.1 + 5239 0.67 0.744829
Target:  5'- cGCCAcgguguugACGUUGGCGUUGGCACC--GGCc -3'
miRNA:   3'- -CGGU--------UGCGGUUGCAGUUGUGGcaCCG- -5'
26829 5' -53 NC_005809.1 + 5283 0.66 0.800563
Target:  5'- uCCAGCGUCGauugcugcaugucugGCagGUCGAgGCCGUaGGCc -3'
miRNA:   3'- cGGUUGCGGU---------------UG--CAGUUgUGGCA-CCG- -5'
26829 5' -53 NC_005809.1 + 5502 0.72 0.429026
Target:  5'- uGCCAuaGCGCCAAC-UCggUGCCuUGGUa -3'
miRNA:   3'- -CGGU--UGCGGUUGcAGuuGUGGcACCG- -5'
26829 5' -53 NC_005809.1 + 5560 0.67 0.712225
Target:  5'- cGCCAcgguaucgacgGCGCCAACGcuggcCGcCACCGUGuCg -3'
miRNA:   3'- -CGGU-----------UGCGGUUGCa----GUuGUGGCACcG- -5'
26829 5' -53 NC_005809.1 + 5620 0.74 0.337802
Target:  5'- aGCCAcgGCGUCGAUGUUGGCGagGUGGCc -3'
miRNA:   3'- -CGGU--UGCGGUUGCAGUUGUggCACCG- -5'
26829 5' -53 NC_005809.1 + 5804 0.67 0.712225
Target:  5'- cGgCAGCGCCAGCGgauagucgggCAuggcgugccgcaGCACCGUG-Cg -3'
miRNA:   3'- -CgGUUGCGGUUGCa---------GU------------UGUGGCACcG- -5'
26829 5' -53 NC_005809.1 + 6611 0.67 0.723192
Target:  5'- uGUCGAUGaCCAGCGg--GCG-CGUGGCg -3'
miRNA:   3'- -CGGUUGC-GGUUGCaguUGUgGCACCG- -5'
26829 5' -53 NC_005809.1 + 6676 0.74 0.346262
Target:  5'- cGCC-ACGCCGAUGuUCAGgGCCGUGu- -3'
miRNA:   3'- -CGGuUGCGGUUGC-AGUUgUGGCACcg -5'
26829 5' -53 NC_005809.1 + 7370 0.67 0.712225
Target:  5'- cGUCGuuCGuCCAGCGgcgGGCACCGcGGCg -3'
miRNA:   3'- -CGGUu-GC-GGUUGCag-UUGUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 7622 0.67 0.744829
Target:  5'- cGCgCAGCGCCGGacaCGugGCCuUGGCc -3'
miRNA:   3'- -CG-GUUGCGGUUgcaGUugUGGcACCG- -5'
26829 5' -53 NC_005809.1 + 7707 0.66 0.755472
Target:  5'- gGCCGGCuuGCCGAUGaacugCAGCGCaCGcucGGCg -3'
miRNA:   3'- -CGGUUG--CGGUUGCa----GUUGUG-GCa--CCG- -5'
26829 5' -53 NC_005809.1 + 7741 0.66 0.786558
Target:  5'- uGCCAuuccuGCGCaguCAGCGauugCAGCACCG-GcGCg -3'
miRNA:   3'- -CGGU-----UGCG---GUUGCa---GUUGUGGCaC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.