miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 42352 0.71 0.468332
Target:  5'- cGCCAAUGCCGagguGCGcCAGuuCGCCGUgucgcccGGCa -3'
miRNA:   3'- -CGGUUGCGGU----UGCaGUU--GUGGCA-------CCG- -5'
26829 5' -53 NC_005809.1 + 42146 0.67 0.734064
Target:  5'- cCCAACgacaagguacgGCCGACGaUCAcCGCCGUGcuGCu -3'
miRNA:   3'- cGGUUG-----------CGGUUGC-AGUuGUGGCAC--CG- -5'
26829 5' -53 NC_005809.1 + 41956 0.67 0.744829
Target:  5'- cGCCGAgGCUGAgGcCAucauCGCCGacaUGGCg -3'
miRNA:   3'- -CGGUUgCGGUUgCaGUu---GUGGC---ACCG- -5'
26829 5' -53 NC_005809.1 + 41949 0.67 0.734064
Target:  5'- cGCCgGACGCCGuguCcaCGGCGCUGcUGGCc -3'
miRNA:   3'- -CGG-UUGCGGUu--GcaGUUGUGGC-ACCG- -5'
26829 5' -53 NC_005809.1 + 41897 0.81 0.131214
Target:  5'- gGCCGGCGCCGcCGUaGGCGCCugGUGGCu -3'
miRNA:   3'- -CGGUUGCGGUuGCAgUUGUGG--CACCG- -5'
26829 5' -53 NC_005809.1 + 41843 0.74 0.346262
Target:  5'- gGUCAucCGCCAgGCGcUCGACuugGCCGUGGCc -3'
miRNA:   3'- -CGGUu-GCGGU-UGC-AGUUG---UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 41521 0.67 0.723192
Target:  5'- --gGACGCCGguucGCGgCGACaugcugccgccgGCCGUGGCc -3'
miRNA:   3'- cggUUGCGGU----UGCaGUUG------------UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 41435 0.66 0.755472
Target:  5'- cGCCGuagcgcgaGCUAACGguuACACCG-GGCc -3'
miRNA:   3'- -CGGUug------CGGUUGCaguUGUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 41072 0.66 0.786558
Target:  5'- gGgCAACGUCAucaaguACGUgAGC-CgGUGGCg -3'
miRNA:   3'- -CgGUUGCGGU------UGCAgUUGuGgCACCG- -5'
26829 5' -53 NC_005809.1 + 40702 0.67 0.730814
Target:  5'- gGCCAGCGCCGGCcacgggcugaaccugCAAgACgGcGGCa -3'
miRNA:   3'- -CGGUUGCGGUUGca-------------GUUgUGgCaCCG- -5'
26829 5' -53 NC_005809.1 + 40478 0.67 0.723192
Target:  5'- cGUCAuuggGCGCgcuaCAugGaCGACAUCGUGGUg -3'
miRNA:   3'- -CGGU----UGCG----GUugCaGUUGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 40423 0.7 0.522352
Target:  5'- cGCCAACGUguACGgCGGCGCgGUugaccGGCu -3'
miRNA:   3'- -CGGUUGCGguUGCaGUUGUGgCA-----CCG- -5'
26829 5' -53 NC_005809.1 + 40339 0.66 0.786558
Target:  5'- gGCCAAgGcCCGGCGUUuAUACCGcgacaUGGa -3'
miRNA:   3'- -CGGUUgC-GGUUGCAGuUGUGGC-----ACCg -5'
26829 5' -53 NC_005809.1 + 40106 0.73 0.390803
Target:  5'- cGCCuugugcagcACGCCu-UGUgCAACAUCGUGGCg -3'
miRNA:   3'- -CGGu--------UGCGGuuGCA-GUUGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 39869 0.71 0.490249
Target:  5'- gGCCAACGUguuCAccacgaacuACGaCAACcuGCCGUGGCu -3'
miRNA:   3'- -CGGUUGCG---GU---------UGCaGUUG--UGGCACCG- -5'
26829 5' -53 NC_005809.1 + 39802 0.67 0.712225
Target:  5'- uGCgCAACGUCGAggUGUCGGCAgUGgucGGCa -3'
miRNA:   3'- -CG-GUUGCGGUU--GCAGUUGUgGCa--CCG- -5'
26829 5' -53 NC_005809.1 + 39739 0.69 0.588697
Target:  5'- uGCUGGCGCCGcuGCG-CGugGCCGcgagcaccUGGCc -3'
miRNA:   3'- -CGGUUGCGGU--UGCaGUugUGGC--------ACCG- -5'
26829 5' -53 NC_005809.1 + 38873 0.67 0.723192
Target:  5'- cGCCGcauGgGgCAGCG-CGuCGCCGUGGUg -3'
miRNA:   3'- -CGGU---UgCgGUUGCaGUuGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 38460 0.74 0.337802
Target:  5'- aGCCGACGaCCGcgACGaauUCAGCGCCGcccaccUGGCc -3'
miRNA:   3'- -CGGUUGC-GGU--UGC---AGUUGUGGC------ACCG- -5'
26829 5' -53 NC_005809.1 + 38377 0.68 0.645099
Target:  5'- cGCCGAUuCCAACuuuUCGGCGCCcacUGGCu -3'
miRNA:   3'- -CGGUUGcGGUUGc--AGUUGUGGc--ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.