miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26829 5' -53 NC_005809.1 + 37331 1.15 0.000541
Target:  5'- uGCCAACGCCAACGUCAACACCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUUGCAGUUGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 30423 0.74 0.337802
Target:  5'- cCCGACGCCuacGCGgaagcgCAGCG-CGUGGCg -3'
miRNA:   3'- cGGUUGCGGu--UGCa-----GUUGUgGCACCG- -5'
26829 5' -53 NC_005809.1 + 36143 0.73 0.390803
Target:  5'- aGCCAagaccgugacagGCGCCAACGaCAugggccgcgacuACACCG-GGCc -3'
miRNA:   3'- -CGGU------------UGCGGUUGCaGU------------UGUGGCaCCG- -5'
26829 5' -53 NC_005809.1 + 27019 0.66 0.806456
Target:  5'- -aCGGCGCCAuugaccuggACGUggaggcCGGCACCGUG-Ca -3'
miRNA:   3'- cgGUUGCGGU---------UGCA------GUUGUGGCACcG- -5'
26829 5' -53 NC_005809.1 + 41897 0.81 0.131214
Target:  5'- gGCCGGCGCCGcCGUaGGCGCCugGUGGCu -3'
miRNA:   3'- -CGGUUGCGGUuGCAgUUGUGG--CACCG- -5'
26829 5' -53 NC_005809.1 + 24918 0.8 0.138923
Target:  5'- cGCCGACGCCA---UCAAgAUCGUGGCc -3'
miRNA:   3'- -CGGUUGCGGUugcAGUUgUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 37662 0.78 0.199875
Target:  5'- aUCGcUGCCGACGUUucCACCGUGGCc -3'
miRNA:   3'- cGGUuGCGGUUGCAGuuGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 27583 0.78 0.205421
Target:  5'- uGgCAACGCCAAUGcCGACGCCauucUGGCg -3'
miRNA:   3'- -CgGUUGCGGUUGCaGUUGUGGc---ACCG- -5'
26829 5' -53 NC_005809.1 + 21956 0.76 0.241552
Target:  5'- aGCCGACaCCGACcugCGACGCCGccUGGCg -3'
miRNA:   3'- -CGGUUGcGGUUGca-GUUGUGGC--ACCG- -5'
26829 5' -53 NC_005809.1 + 25966 0.74 0.321335
Target:  5'- aCCAACGgCGGCGcCAACACCaucgcGUGGUc -3'
miRNA:   3'- cGGUUGCgGUUGCaGUUGUGG-----CACCG- -5'
26829 5' -53 NC_005809.1 + 14001 0.76 0.261528
Target:  5'- uGCCgGugGCCGACGUgcGCGCCGcgaUGGCc -3'
miRNA:   3'- -CGG-UugCGGUUGCAguUGUGGC---ACCG- -5'
26829 5' -53 NC_005809.1 + 37300 0.76 0.241552
Target:  5'- -aCAACGCCGcgaACaUCAACACgGUGGCc -3'
miRNA:   3'- cgGUUGCGGU---UGcAGUUGUGgCACCG- -5'
26829 5' -53 NC_005809.1 + 36948 0.92 0.023402
Target:  5'- gGCCAccuCGCCAACaUCGACGCCGUGGCu -3'
miRNA:   3'- -CGGUu--GCGGUUGcAGUUGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 25017 0.75 0.280637
Target:  5'- aCCGGCGCCGacaucauucugaccAaucaaGUCAACGCgGUGGCg -3'
miRNA:   3'- cGGUUGCGGU--------------Ug----CAGUUGUGgCACCG- -5'
26829 5' -53 NC_005809.1 + 37007 0.89 0.036845
Target:  5'- gGCCAGCGUUGGCGccgUCGAUACCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUUGC---AGUUGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 37229 0.77 0.216914
Target:  5'- gGCUGuCGCCAACGacaUCGACAgCGUGGUa -3'
miRNA:   3'- -CGGUuGCGGUUGC---AGUUGUgGCACCG- -5'
26829 5' -53 NC_005809.1 + 9652 0.74 0.321335
Target:  5'- gGCCGAacaGCCAGcCGUgcAgGCCGUGGCc -3'
miRNA:   3'- -CGGUUg--CGGUU-GCAguUgUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 38316 0.73 0.3816
Target:  5'- uGCCGGCGCUGACGgcCGGCACCGa--- -3'
miRNA:   3'- -CGGUUGCGGUUGCa-GUUGUGGCaccg -5'
26829 5' -53 NC_005809.1 + 37260 0.86 0.057778
Target:  5'- uCCGugGCCGGCGaccuggaaaauaUCGACGCCGUGGCc -3'
miRNA:   3'- cGGUugCGGUUGC------------AGUUGUGGCACCG- -5'
26829 5' -53 NC_005809.1 + 4656 0.8 0.151266
Target:  5'- gGCCAucGCGUCAAgGUCGAUGCCGUaGGUa -3'
miRNA:   3'- -CGGU--UGCGGUUgCAGUUGUGGCA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.