miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 3' -54.6 NC_005809.1 + 36960 1.09 0.00085
Target:  5'- aACAUCGACGCCGUGGCUACCAACGAGg -3'
miRNA:   3'- -UGUAGCUGCGGCACCGAUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 37281 0.78 0.141831
Target:  5'- aAUAUCGACGCCGUGGCcgaCAACGc- -3'
miRNA:   3'- -UGUAGCUGCGGCACCGaugGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 34582 0.77 0.177404
Target:  5'- cACGUcCGACGCCGUGGUgcugcUGCCuGACGAa -3'
miRNA:   3'- -UGUA-GCUGCGGCACCG-----AUGG-UUGCUc -5'
26831 3' -54.6 NC_005809.1 + 37685 0.76 0.202934
Target:  5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3'
miRNA:   3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 14840 0.76 0.203487
Target:  5'- -gGUCGAUGCCGuUGGCgGCCAGCGc- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGaUGGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 36990 0.74 0.272657
Target:  5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3'
miRNA:   3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 20288 0.73 0.320969
Target:  5'- gACuUCGACGCCGUGGUcuaUcaccauucgcugacgGCCGGCGAa -3'
miRNA:   3'- -UGuAGCUGCGGCACCG---A---------------UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 23393 0.72 0.342349
Target:  5'- uCAUCGACGCCGgcGGCacgGgCAGCGAc -3'
miRNA:   3'- uGUAGCUGCGGCa-CCGa--UgGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 9856 0.72 0.359483
Target:  5'- gGCGUCGAUGagCGUGGC-ACCGGCGc- -3'
miRNA:   3'- -UGUAGCUGCg-GCACCGaUGGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 1696 0.71 0.368272
Target:  5'- -aGUCGAgaaauuCGCCGUgGGCcggcgUGCCGGCGAGg -3'
miRNA:   3'- ugUAGCU------GCGGCA-CCG-----AUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 32922 0.71 0.386287
Target:  5'- cCAgCGGuucCGCCGUGGCUGCuCAACGuGu -3'
miRNA:   3'- uGUaGCU---GCGGCACCGAUG-GUUGCuC- -5'
26831 3' -54.6 NC_005809.1 + 12007 0.7 0.424015
Target:  5'- cACGUCGGCcagcagcgcgGCCGUGGC---CGGCGAGg -3'
miRNA:   3'- -UGUAGCUG----------CGGCACCGaugGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 16965 0.7 0.424015
Target:  5'- cGCcgCGcCGCCGUGGUUGCCAcuGCcuGGGc -3'
miRNA:   3'- -UGuaGCuGCGGCACCGAUGGU--UG--CUC- -5'
26831 3' -54.6 NC_005809.1 + 26132 0.69 0.494992
Target:  5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3'
miRNA:   3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 25095 0.69 0.516263
Target:  5'- cGCGccCGGCGCCGUGGgauaCAGCGGGu -3'
miRNA:   3'- -UGUa-GCUGCGGCACCgaugGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 22008 0.69 0.516263
Target:  5'- uCGUCGGCGCC-UGGCUcgaaauagACCGACu-- -3'
miRNA:   3'- uGUAGCUGCGGcACCGA--------UGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 2844 0.68 0.537893
Target:  5'- cGCAgCGGCGCCa--GC-ACCAGCGAGg -3'
miRNA:   3'- -UGUaGCUGCGGcacCGaUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 21328 0.68 0.544444
Target:  5'- gGC-UUGAUGCCGgccaccgcgcccaGGUUGCCAACGAa -3'
miRNA:   3'- -UGuAGCUGCGGCa------------CCGAUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 26718 0.68 0.559826
Target:  5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3'
miRNA:   3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 41855 0.68 0.580887
Target:  5'- gGCGcUCGACuugGCCGUGGCcgacaagaucaUcaaggaaaacccaGCCAGCGAGg -3'
miRNA:   3'- -UGU-AGCUG---CGGCACCG-----------A-------------UGGUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.