miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 3' -54.6 NC_005809.1 + 1696 0.71 0.368272
Target:  5'- -aGUCGAgaaauuCGCCGUgGGCcggcgUGCCGGCGAGg -3'
miRNA:   3'- ugUAGCU------GCGGCA-CCG-----AUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 2844 0.68 0.537893
Target:  5'- cGCAgCGGCGCCa--GC-ACCAGCGAGg -3'
miRNA:   3'- -UGUaGCUGCGGcacCGaUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 5346 0.67 0.649261
Target:  5'- -uGUCGAUGUCGuUGGCgacaGCCAACa-- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGa---UGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 5638 0.67 0.593157
Target:  5'- gGCGagGugGCCGUacacGGCggaaACCAGCGGu -3'
miRNA:   3'- -UGUagCugCGGCA----CCGa---UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 8455 0.66 0.660475
Target:  5'- gAUGUCGGCGUCGaGGUgGCCuGCGAu -3'
miRNA:   3'- -UGUAGCUGCGGCaCCGaUGGuUGCUc -5'
26831 3' -54.6 NC_005809.1 + 8977 0.66 0.660475
Target:  5'- cCAgCGugGCCGUGccGCgauaGCCAGCGGu -3'
miRNA:   3'- uGUaGCugCGGCAC--CGa---UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 9856 0.72 0.359483
Target:  5'- gGCGUCGAUGagCGUGGC-ACCGGCGc- -3'
miRNA:   3'- -UGUAGCUGCg-GCACCGaUGGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 12007 0.7 0.424015
Target:  5'- cACGUCGGCcagcagcgcgGCCGUGGC---CGGCGAGg -3'
miRNA:   3'- -UGUAGCUG----------CGGCACCGaugGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 13804 0.66 0.682809
Target:  5'- aGCG-CGACGCCGUGcGC-GCCGA-GAa -3'
miRNA:   3'- -UGUaGCUGCGGCAC-CGaUGGUUgCUc -5'
26831 3' -54.6 NC_005809.1 + 13878 0.66 0.691691
Target:  5'- aGCAUCGACcuugugaacgaCGUGGCgcgccgcGCUGGCGAGg -3'
miRNA:   3'- -UGUAGCUGcg---------GCACCGa------UGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 14840 0.76 0.203487
Target:  5'- -gGUCGAUGCCGuUGGCgGCCAGCGc- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGaUGGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 16965 0.7 0.424015
Target:  5'- cGCcgCGcCGCCGUGGUUGCCAcuGCcuGGGc -3'
miRNA:   3'- -UGuaGCuGCGGCACCGAUGGU--UG--CUC- -5'
26831 3' -54.6 NC_005809.1 + 17030 0.68 0.582001
Target:  5'- uCAUCGGCuaCGgggGcGCUGCCGGCGGc -3'
miRNA:   3'- uGUAGCUGcgGCa--C-CGAUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 18411 0.66 0.682809
Target:  5'- cACGUCGGCGaagGUGGCguuguCCGcCGAGu -3'
miRNA:   3'- -UGUAGCUGCgg-CACCGau---GGUuGCUC- -5'
26831 3' -54.6 NC_005809.1 + 18815 0.67 0.604348
Target:  5'- cGCAUCGGC-CCgGUGGC-GCCGGCa-- -3'
miRNA:   3'- -UGUAGCUGcGG-CACCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 20288 0.73 0.320969
Target:  5'- gACuUCGACGCCGUGGUcuaUcaccauucgcugacgGCCGGCGAa -3'
miRNA:   3'- -UGuAGCUGCGGCACCG---A---------------UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 21328 0.68 0.544444
Target:  5'- gGC-UUGAUGCCGgccaccgcgcccaGGUUGCCAACGAa -3'
miRNA:   3'- -UGuAGCUGCGGCa------------CCGAUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 22008 0.69 0.516263
Target:  5'- uCGUCGGCGCC-UGGCUcgaaauagACCGACu-- -3'
miRNA:   3'- uGUAGCUGCGGcACCGA--------UGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 23393 0.72 0.342349
Target:  5'- uCAUCGACGCCGgcGGCacgGgCAGCGAc -3'
miRNA:   3'- uGUAGCUGCGGCa-CCGa--UgGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 24628 0.66 0.704941
Target:  5'- cACGUCGAa-CCacaUGGCgUGCCGGCGGGc -3'
miRNA:   3'- -UGUAGCUgcGGc--ACCG-AUGGUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.