miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 3' -54.6 NC_005809.1 + 41855 0.68 0.580887
Target:  5'- gGCGcUCGACuugGCCGUGGCcgacaagaucaUcaaggaaaacccaGCCAGCGAGg -3'
miRNA:   3'- -UGU-AGCUG---CGGCACCG-----------A-------------UGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 39399 0.67 0.593157
Target:  5'- cGCAgcgGACGCCG-GGCuUGCCAugcuGCGAu -3'
miRNA:   3'- -UGUag-CUGCGGCaCCG-AUGGU----UGCUc -5'
26831 3' -54.6 NC_005809.1 + 37685 0.76 0.202934
Target:  5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3'
miRNA:   3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 37281 0.78 0.141831
Target:  5'- aAUAUCGACGCCGUGGCcgaCAACGc- -3'
miRNA:   3'- -UGUAGCUGCGGCACCGaugGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 37242 0.67 0.593157
Target:  5'- gACAUCGACaG-CGUGGUauccgugGCCGGCGAc -3'
miRNA:   3'- -UGUAGCUG-CgGCACCGa------UGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 37021 0.67 0.638031
Target:  5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3'
miRNA:   3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5'
26831 3' -54.6 NC_005809.1 + 36990 0.74 0.272657
Target:  5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3'
miRNA:   3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5'
26831 3' -54.6 NC_005809.1 + 36960 1.09 0.00085
Target:  5'- aACAUCGACGCCGUGGCUACCAACGAGg -3'
miRNA:   3'- -UGUAGCUGCGGCACCGAUGGUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 36178 0.66 0.682809
Target:  5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3'
miRNA:   3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 36127 0.67 0.638031
Target:  5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3'
miRNA:   3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5'
26831 3' -54.6 NC_005809.1 + 34582 0.77 0.177404
Target:  5'- cACGUcCGACGCCGUGGUgcugcUGCCuGACGAa -3'
miRNA:   3'- -UGUA-GCUGCGGCACCG-----AUGG-UUGCUc -5'
26831 3' -54.6 NC_005809.1 + 33799 0.66 0.671661
Target:  5'- cCAUCGuGCGCCGcGuGCUGCCcgaAGCGGc -3'
miRNA:   3'- uGUAGC-UGCGGCaC-CGAUGG---UUGCUc -5'
26831 3' -54.6 NC_005809.1 + 32922 0.71 0.386287
Target:  5'- cCAgCGGuucCGCCGUGGCUGCuCAACGuGu -3'
miRNA:   3'- uGUaGCU---GCGGCACCGAUG-GUUGCuC- -5'
26831 3' -54.6 NC_005809.1 + 32657 0.66 0.704941
Target:  5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3'
miRNA:   3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5'
26831 3' -54.6 NC_005809.1 + 29926 0.67 0.593157
Target:  5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3'
miRNA:   3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5'
26831 3' -54.6 NC_005809.1 + 27726 0.67 0.626795
Target:  5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3'
miRNA:   3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 27597 0.67 0.593157
Target:  5'- ---cCGACGCCauucUGGCgACCGGCGAc -3'
miRNA:   3'- uguaGCUGCGGc---ACCGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 26718 0.68 0.559826
Target:  5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3'
miRNA:   3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5'
26831 3' -54.6 NC_005809.1 + 26132 0.69 0.494992
Target:  5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3'
miRNA:   3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5'
26831 3' -54.6 NC_005809.1 + 25803 0.67 0.615564
Target:  5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3'
miRNA:   3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.