Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26831 | 3' | -54.6 | NC_005809.1 | + | 39399 | 0.67 | 0.593157 |
Target: 5'- cGCAgcgGACGCCG-GGCuUGCCAugcuGCGAu -3' miRNA: 3'- -UGUag-CUGCGGCaCCG-AUGGU----UGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 27597 | 0.67 | 0.593157 |
Target: 5'- ---cCGACGCCauucUGGCgACCGGCGAc -3' miRNA: 3'- uguaGCUGCGGc---ACCGaUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 17030 | 0.68 | 0.582001 |
Target: 5'- uCAUCGGCuaCGgggGcGCUGCCGGCGGc -3' miRNA: 3'- uGUAGCUGcgGCa--C-CGAUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 41855 | 0.68 | 0.580887 |
Target: 5'- gGCGcUCGACuugGCCGUGGCcgacaagaucaUcaaggaaaacccaGCCAGCGAGg -3' miRNA: 3'- -UGU-AGCUG---CGGCACCG-----------A-------------UGGUUGCUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 26718 | 0.68 | 0.559826 |
Target: 5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3' miRNA: 3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 21328 | 0.68 | 0.544444 |
Target: 5'- gGC-UUGAUGCCGgccaccgcgcccaGGUUGCCAACGAa -3' miRNA: 3'- -UGuAGCUGCGGCa------------CCGAUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 2844 | 0.68 | 0.537893 |
Target: 5'- cGCAgCGGCGCCa--GC-ACCAGCGAGg -3' miRNA: 3'- -UGUaGCUGCGGcacCGaUGGUUGCUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 25095 | 0.69 | 0.516263 |
Target: 5'- cGCGccCGGCGCCGUGGgauaCAGCGGGu -3' miRNA: 3'- -UGUa-GCUGCGGCACCgaugGUUGCUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 22008 | 0.69 | 0.516263 |
Target: 5'- uCGUCGGCGCC-UGGCUcgaaauagACCGACu-- -3' miRNA: 3'- uGUAGCUGCGGcACCGA--------UGGUUGcuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 26132 | 0.69 | 0.494992 |
Target: 5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3' miRNA: 3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 12007 | 0.7 | 0.424015 |
Target: 5'- cACGUCGGCcagcagcgcgGCCGUGGC---CGGCGAGg -3' miRNA: 3'- -UGUAGCUG----------CGGCACCGaugGUUGCUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 16965 | 0.7 | 0.424015 |
Target: 5'- cGCcgCGcCGCCGUGGUUGCCAcuGCcuGGGc -3' miRNA: 3'- -UGuaGCuGCGGCACCGAUGGU--UG--CUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 32922 | 0.71 | 0.386287 |
Target: 5'- cCAgCGGuucCGCCGUGGCUGCuCAACGuGu -3' miRNA: 3'- uGUaGCU---GCGGCACCGAUG-GUUGCuC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 1696 | 0.71 | 0.368272 |
Target: 5'- -aGUCGAgaaauuCGCCGUgGGCcggcgUGCCGGCGAGg -3' miRNA: 3'- ugUAGCU------GCGGCA-CCG-----AUGGUUGCUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 9856 | 0.72 | 0.359483 |
Target: 5'- gGCGUCGAUGagCGUGGC-ACCGGCGc- -3' miRNA: 3'- -UGUAGCUGCg-GCACCGaUGGUUGCuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 23393 | 0.72 | 0.342349 |
Target: 5'- uCAUCGACGCCGgcGGCacgGgCAGCGAc -3' miRNA: 3'- uGUAGCUGCGGCa-CCGa--UgGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 20288 | 0.73 | 0.320969 |
Target: 5'- gACuUCGACGCCGUGGUcuaUcaccauucgcugacgGCCGGCGAa -3' miRNA: 3'- -UGuAGCUGCGGCACCG---A---------------UGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 36990 | 0.74 | 0.272657 |
Target: 5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3' miRNA: 3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 14840 | 0.76 | 0.203487 |
Target: 5'- -gGUCGAUGCCGuUGGCgGCCAGCGc- -3' miRNA: 3'- ugUAGCUGCGGC-ACCGaUGGUUGCuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 37685 | 0.76 | 0.202934 |
Target: 5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3' miRNA: 3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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