miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 5' -60.5 NC_005809.1 + 17092 0.67 0.32976
Target:  5'- cGGCGCGGUucuCGGCCGgGCcUUGGgGCu -3'
miRNA:   3'- -CUGUGCCAcc-GCCGGU-CGcAACCgCG- -5'
26831 5' -60.5 NC_005809.1 + 17898 0.68 0.277791
Target:  5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3'
miRNA:   3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 18317 0.68 0.284797
Target:  5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3'
miRNA:   3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5'
26831 5' -60.5 NC_005809.1 + 18395 0.8 0.038128
Target:  5'- uGGCGcCGGUGGCGGCCacgucGGCGaaggUGGCGUu -3'
miRNA:   3'- -CUGU-GCCACCGCCGG-----UCGCa---ACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 18669 0.68 0.291941
Target:  5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3'
miRNA:   3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 18820 0.75 0.087425
Target:  5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3'
miRNA:   3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 19344 0.66 0.379748
Target:  5'- aGGCGCGGUcGGUGGCCgaGGCcgaGGC-Cg -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--UCGcaaCCGcG- -5'
26831 5' -60.5 NC_005809.1 + 21246 0.66 0.388558
Target:  5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3'
miRNA:   3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5'
26831 5' -60.5 NC_005809.1 + 21432 0.71 0.174135
Target:  5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3'
miRNA:   3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5'
26831 5' -60.5 NC_005809.1 + 21584 0.73 0.122222
Target:  5'- cGGCcacuuCGGUGGCGGUCAucuGCGgauUGGUGCc -3'
miRNA:   3'- -CUGu----GCCACCGCCGGU---CGCa--ACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 21724 0.69 0.226634
Target:  5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3'
miRNA:   3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 22231 0.71 0.183686
Target:  5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3'
miRNA:   3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 23713 0.67 0.299225
Target:  5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3'
miRNA:   3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 25050 0.69 0.244816
Target:  5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3'
miRNA:   3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5'
26831 5' -60.5 NC_005809.1 + 26764 0.67 0.306648
Target:  5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3'
miRNA:   3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5'
26831 5' -60.5 NC_005809.1 + 27434 0.66 0.354132
Target:  5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3'
miRNA:   3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 27633 0.66 0.374527
Target:  5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3'
miRNA:   3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 27836 0.67 0.306648
Target:  5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3'
miRNA:   3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5'
26831 5' -60.5 NC_005809.1 + 28662 0.68 0.284797
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 28758 0.66 0.362534
Target:  5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3'
miRNA:   3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.