miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 5' -60.5 NC_005809.1 + 9050 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccguaauuGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9098 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9146 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9194 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9242 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9290 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9303 0.66 0.379748
Target:  5'- uGACuuccuCGGcgaccUGGCGGCgCA-CGUcGGCGCg -3'
miRNA:   3'- -CUGu----GCC-----ACCGCCG-GUcGCAaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 9338 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 10351 0.68 0.284797
Target:  5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3'
miRNA:   3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 11407 0.66 0.389446
Target:  5'- -cCAgGGUcuugagcagcGGCGaGCCGGCGUgcaggucgccgauaaGGCGCg -3'
miRNA:   3'- cuGUgCCA----------CCGC-CGGUCGCAa--------------CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 12020 0.67 0.306648
Target:  5'- aGCGCGGccgUGGcCGGCgaggucuugccCAGCGUgucgaagucgaUGGCGCc -3'
miRNA:   3'- cUGUGCC---ACC-GCCG-----------GUCGCA-----------ACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 12436 0.8 0.039248
Target:  5'- cGACGCGGU-GCaGGCCGGCGgcguguucUGGCGCg -3'
miRNA:   3'- -CUGUGCCAcCG-CCGGUCGCa-------ACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 12740 0.7 0.215158
Target:  5'- uGCugGGUGccGCGcCCAGaCGcUUGGCGCg -3'
miRNA:   3'- cUGugCCAC--CGCcGGUC-GC-AACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 13302 0.68 0.284797
Target:  5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3'
miRNA:   3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 14843 0.73 0.115639
Target:  5'- cGAUGCcGuUGGCGGCCAGCGccgcacgcugGGCGCc -3'
miRNA:   3'- -CUGUGcC-ACCGCCGGUCGCaa--------CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 15117 0.68 0.256948
Target:  5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3'
miRNA:   3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 15539 0.69 0.220832
Target:  5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3'
miRNA:   3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 16245 0.71 0.178854
Target:  5'- cGGCACGauaUGGCGGauGGCGUUGGCcucGCg -3'
miRNA:   3'- -CUGUGCc--ACCGCCggUCGCAACCG---CG- -5'
26831 5' -60.5 NC_005809.1 + 16581 0.7 0.209609
Target:  5'- cGACGCGccGGacgaGGCCgaccacgcgauGGUGUUGGCGCc -3'
miRNA:   3'- -CUGUGCcaCCg---CCGG-----------UCGCAACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 17034 0.69 0.244816
Target:  5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3'
miRNA:   3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.