Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26831 | 5' | -60.5 | NC_005809.1 | + | 1710 | 0.67 | 0.32976 |
Target: 5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3' miRNA: 3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 8931 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccguaauuGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 23713 | 0.67 | 0.299225 |
Target: 5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3' miRNA: 3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9290 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9146 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9242 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 7055 | 0.67 | 0.32897 |
Target: 5'- cGCAUGGccucgGGCGG-CAGCGUcguuugaacaggcUGGCGg -3' miRNA: 3'- cUGUGCCa----CCGCCgGUCGCA-------------ACCGCg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9002 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9050 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccguaauuGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9338 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9098 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 9194 | 0.67 | 0.336137 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 31097 | 0.67 | 0.306648 |
Target: 5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3' miRNA: 3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 26764 | 0.67 | 0.306648 |
Target: 5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3' miRNA: 3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 17898 | 0.68 | 0.277791 |
Target: 5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3' miRNA: 3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 18669 | 0.68 | 0.291941 |
Target: 5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3' miRNA: 3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 15117 | 0.68 | 0.256948 |
Target: 5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3' miRNA: 3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 32039 | 0.68 | 0.270924 |
Target: 5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3' miRNA: 3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 13302 | 0.68 | 0.284797 |
Target: 5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3' miRNA: 3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 28662 | 0.68 | 0.284797 |
Target: 5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3' miRNA: 3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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