miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26832 3' -51.8 NC_005809.1 + 41849 0.72 0.496189
Target:  5'- --cCGCCaGGCGcucGACUUGGCCGuGGCCGa -3'
miRNA:   3'- ugaGCGG-CUGU---UUGAAUCGGC-UUGGC- -5'
26832 3' -51.8 NC_005809.1 + 39930 0.69 0.687781
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26832 3' -51.8 NC_005809.1 + 37964 0.66 0.843885
Target:  5'- --cCGCCGACAucauc-GCCGAgGCCGa -3'
miRNA:   3'- ugaGCGGCUGUuugaauCGGCU-UGGC- -5'
26832 3' -51.8 NC_005809.1 + 37939 0.67 0.764866
Target:  5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 37710 0.73 0.423783
Target:  5'- gGCUCGCCGGCGAggauuggaaGC-UGGCCGcuuuCCGu -3'
miRNA:   3'- -UGAGCGGCUGUU---------UGaAUCGGCuu--GGC- -5'
26832 3' -51.8 NC_005809.1 + 37319 0.67 0.795945
Target:  5'- cGCaUUGCCGACcccGACcugccGGCCGAACUGc -3'
miRNA:   3'- -UG-AGCGGCUGu--UUGaa---UCGGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 36836 1.09 0.001844
Target:  5'- aACUCGCCGACAAACUUAGCCGAACCGu -3'
miRNA:   3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 34993 0.69 0.66162
Target:  5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3'
miRNA:   3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5'
26832 3' -51.8 NC_005809.1 + 34342 0.69 0.676436
Target:  5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3'
miRNA:   3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5'
26832 3' -51.8 NC_005809.1 + 33279 0.66 0.804959
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26832 3' -51.8 NC_005809.1 + 33016 0.7 0.585017
Target:  5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3'
miRNA:   3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5'
26832 3' -51.8 NC_005809.1 + 32706 0.66 0.852793
Target:  5'- uGCUCGCCGcgugcaauCAGGCgauggagGGCUGAcGCCa -3'
miRNA:   3'- -UGAGCGGCu-------GUUUGaa-----UCGGCU-UGGc -5'
26832 3' -51.8 NC_005809.1 + 31507 0.68 0.732458
Target:  5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3'
miRNA:   3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 31455 0.68 0.710286
Target:  5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3'
miRNA:   3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5'
26832 3' -51.8 NC_005809.1 + 31023 0.66 0.852793
Target:  5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3'
miRNA:   3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 30556 0.67 0.795945
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26832 3' -51.8 NC_005809.1 + 28224 0.69 0.65362
Target:  5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3'
miRNA:   3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 27683 0.66 0.815759
Target:  5'- -aUCGCCGcGCAGACccugaaAGCCGGGCa- -3'
miRNA:   3'- ugAGCGGC-UGUUUGaa----UCGGCUUGgc -5'
26832 3' -51.8 NC_005809.1 + 26892 0.66 0.852793
Target:  5'- cUUCGUCGAUAGcggccugacguACUcGGgCGAGCCGg -3'
miRNA:   3'- uGAGCGGCUGUU-----------UGAaUCgGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 26499 0.69 0.642175
Target:  5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3'
miRNA:   3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.