Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26832 | 3' | -51.8 | NC_005809.1 | + | 354 | 0.77 | 0.247879 |
Target: 5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3' miRNA: 3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 679 | 0.66 | 0.843885 |
Target: 5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3' miRNA: 3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 1182 | 0.67 | 0.775391 |
Target: 5'- uCUCGCCGcCGGGgUcGGCCGggUUGu -3' miRNA: 3'- uGAGCGGCuGUUUgAaUCGGCuuGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 1527 | 0.69 | 0.687781 |
Target: 5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3' miRNA: 3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 4822 | 0.67 | 0.754194 |
Target: 5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3' miRNA: 3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 7711 | 0.69 | 0.665045 |
Target: 5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3' miRNA: 3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 8525 | 0.73 | 0.440798 |
Target: 5'- -gUCGCCGGCGAACUUgcccagguaucgcaGGCCGcGCuCGa -3' miRNA: 3'- ugAGCGGCUGUUUGAA--------------UCGGCuUG-GC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 8702 | 0.68 | 0.710286 |
Target: 5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3' miRNA: 3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 8924 | 0.66 | 0.843885 |
Target: 5'- uCUCGCCaGCGG---UGGCCGuGCCGu -3' miRNA: 3'- uGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 9210 | 0.66 | 0.815759 |
Target: 5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3' miRNA: 3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 9234 | 0.66 | 0.815759 |
Target: 5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3' miRNA: 3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 9354 | 0.66 | 0.815759 |
Target: 5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3' miRNA: 3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 9378 | 0.66 | 0.834737 |
Target: 5'- gAUUCGCCaGCGG---UGGCCGuGCCGa -3' miRNA: 3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 9563 | 0.71 | 0.55115 |
Target: 5'- uGCUCGCCGgugGCGAGCauccGGUCGAACaCGu -3' miRNA: 3'- -UGAGCGGC---UGUUUGaa--UCGGCUUG-GC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 10028 | 0.67 | 0.775391 |
Target: 5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3' miRNA: 3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 11249 | 0.66 | 0.834737 |
Target: 5'- -gUCGCCG-CGAcCUgggauuccAGCCGGGCCa -3' miRNA: 3'- ugAGCGGCuGUUuGAa-------UCGGCUUGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 11329 | 0.66 | 0.843885 |
Target: 5'- -gUCGcCCGGCucguAGCUgGGCCGcgcGCCGg -3' miRNA: 3'- ugAGC-GGCUGu---UUGAaUCGGCu--UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 11776 | 0.69 | 0.687781 |
Target: 5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3' miRNA: 3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 15061 | 0.75 | 0.32387 |
Target: 5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3' miRNA: 3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 16938 | 0.68 | 0.72142 |
Target: 5'- aACUCGCCGAgGuggacgcgcuGCUggcGCCGcGCCGc -3' miRNA: 3'- -UGAGCGGCUgUu---------UGAau-CGGCuUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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