miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26832 3' -51.8 NC_005809.1 + 17084 0.68 0.743387
Target:  5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3'
miRNA:   3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 17258 0.66 0.852793
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 18000 0.71 0.539988
Target:  5'- -gUCGCCGcCGGACUUGucGuCCGAACCu -3'
miRNA:   3'- ugAGCGGCuGUUUGAAU--C-GGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 18035 0.7 0.585017
Target:  5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3'
miRNA:   3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 18365 0.68 0.72142
Target:  5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3'
miRNA:   3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 18465 0.66 0.842982
Target:  5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3'
miRNA:   3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5'
26832 3' -51.8 NC_005809.1 + 18578 0.67 0.795945
Target:  5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3'
miRNA:   3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5'
26832 3' -51.8 NC_005809.1 + 19016 0.72 0.485486
Target:  5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3'
miRNA:   3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5'
26832 3' -51.8 NC_005809.1 + 19578 0.71 0.539988
Target:  5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3'
miRNA:   3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5'
26832 3' -51.8 NC_005809.1 + 21290 0.69 0.675298
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5'
26832 3' -51.8 NC_005809.1 + 23432 0.7 0.596403
Target:  5'- uCUgGCUGACGGugUgggGGCCGAACa- -3'
miRNA:   3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5'
26832 3' -51.8 NC_005809.1 + 23759 0.66 0.843885
Target:  5'- --aUGCCGGCGccACcgGGCCGAugCGc -3'
miRNA:   3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5'
26832 3' -51.8 NC_005809.1 + 24174 0.69 0.665045
Target:  5'- cUUCGCCGACG----UGGCCGccACCGg -3'
miRNA:   3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5'
26832 3' -51.8 NC_005809.1 + 24395 0.66 0.805951
Target:  5'- aACUCGCUGcGCAAguugaagaaGCgcAGCCGGcCCGa -3'
miRNA:   3'- -UGAGCGGC-UGUU---------UGaaUCGGCUuGGC- -5'
26832 3' -51.8 NC_005809.1 + 24467 0.7 0.596403
Target:  5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3'
miRNA:   3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5'
26832 3' -51.8 NC_005809.1 + 26071 0.66 0.843885
Target:  5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3'
miRNA:   3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 26499 0.69 0.642175
Target:  5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3'
miRNA:   3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5'
26832 3' -51.8 NC_005809.1 + 26892 0.66 0.852793
Target:  5'- cUUCGUCGAUAGcggccugacguACUcGGgCGAGCCGg -3'
miRNA:   3'- uGAGCGGCUGUU-----------UGAaUCgGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 27683 0.66 0.815759
Target:  5'- -aUCGCCGcGCAGACccugaaAGCCGGGCa- -3'
miRNA:   3'- ugAGCGGC-UGUUUGaa----UCGGCUUGgc -5'
26832 3' -51.8 NC_005809.1 + 28224 0.69 0.65362
Target:  5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3'
miRNA:   3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.