miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26832 3' -51.8 NC_005809.1 + 10028 0.67 0.775391
Target:  5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3'
miRNA:   3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5'
26832 3' -51.8 NC_005809.1 + 37939 0.67 0.764866
Target:  5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 18578 0.67 0.795945
Target:  5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3'
miRNA:   3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5'
26832 3' -51.8 NC_005809.1 + 4822 0.67 0.754194
Target:  5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3'
miRNA:   3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5'
26832 3' -51.8 NC_005809.1 + 1182 0.67 0.775391
Target:  5'- uCUCGCCGcCGGGgUcGGCCGggUUGu -3'
miRNA:   3'- uGAGCGGCuGUUUgAaUCGGCuuGGC- -5'
26832 3' -51.8 NC_005809.1 + 37319 0.67 0.795945
Target:  5'- cGCaUUGCCGACcccGACcugccGGCCGAACUGc -3'
miRNA:   3'- -UG-AGCGGCUGu--UUGaa---UCGGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 18365 0.68 0.72142
Target:  5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3'
miRNA:   3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 31507 0.68 0.732458
Target:  5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3'
miRNA:   3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 31455 0.68 0.710286
Target:  5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3'
miRNA:   3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5'
26832 3' -51.8 NC_005809.1 + 16938 0.68 0.72142
Target:  5'- aACUCGCCGAgGuggacgcgcuGCUggcGCCGcGCCGc -3'
miRNA:   3'- -UGAGCGGCUgUu---------UGAau-CGGCuUGGC- -5'
26832 3' -51.8 NC_005809.1 + 8702 0.68 0.710286
Target:  5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3'
miRNA:   3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5'
26832 3' -51.8 NC_005809.1 + 17084 0.68 0.743387
Target:  5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3'
miRNA:   3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5'
26832 3' -51.8 NC_005809.1 + 39930 0.69 0.687781
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26832 3' -51.8 NC_005809.1 + 7711 0.69 0.665045
Target:  5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3'
miRNA:   3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5'
26832 3' -51.8 NC_005809.1 + 21290 0.69 0.675298
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5'
26832 3' -51.8 NC_005809.1 + 11776 0.69 0.687781
Target:  5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3'
miRNA:   3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5'
26832 3' -51.8 NC_005809.1 + 28224 0.69 0.65362
Target:  5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3'
miRNA:   3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5'
26832 3' -51.8 NC_005809.1 + 34993 0.69 0.66162
Target:  5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3'
miRNA:   3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5'
26832 3' -51.8 NC_005809.1 + 34342 0.69 0.676436
Target:  5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3'
miRNA:   3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5'
26832 3' -51.8 NC_005809.1 + 1527 0.69 0.687781
Target:  5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3'
miRNA:   3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.