Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26832 | 3' | -51.8 | NC_005809.1 | + | 36836 | 1.09 | 0.001844 |
Target: 5'- aACUCGCCGACAAACUUAGCCGAACCGu -3' miRNA: 3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 33279 | 0.66 | 0.804959 |
Target: 5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3' miRNA: 3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 9234 | 0.66 | 0.815759 |
Target: 5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3' miRNA: 3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 17258 | 0.66 | 0.852793 |
Target: 5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3' miRNA: 3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 19578 | 0.71 | 0.539988 |
Target: 5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3' miRNA: 3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 33016 | 0.7 | 0.585017 |
Target: 5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3' miRNA: 3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 24174 | 0.69 | 0.665045 |
Target: 5'- cUUCGCCGACG----UGGCCGccACCGg -3' miRNA: 3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 7711 | 0.69 | 0.665045 |
Target: 5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3' miRNA: 3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 8702 | 0.68 | 0.710286 |
Target: 5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3' miRNA: 3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 30556 | 0.67 | 0.795945 |
Target: 5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3' miRNA: 3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 16938 | 0.68 | 0.72142 |
Target: 5'- aACUCGCCGAgGuggacgcgcuGCUggcGCCGcGCCGc -3' miRNA: 3'- -UGAGCGGCUgUu---------UGAau-CGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 39930 | 0.69 | 0.687781 |
Target: 5'- cCUCGCaCGGCAAGC---GCCGGACg- -3' miRNA: 3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 354 | 0.77 | 0.247879 |
Target: 5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3' miRNA: 3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 37939 | 0.67 | 0.764866 |
Target: 5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3' miRNA: 3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 15061 | 0.75 | 0.32387 |
Target: 5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3' miRNA: 3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 21290 | 0.69 | 0.675298 |
Target: 5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3' miRNA: 3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 10028 | 0.67 | 0.775391 |
Target: 5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3' miRNA: 3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 9210 | 0.66 | 0.815759 |
Target: 5'- gAUUCGCCaGCGG---UGGCCGuGCCGg -3' miRNA: 3'- -UGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 19016 | 0.72 | 0.485486 |
Target: 5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3' miRNA: 3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5' |
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26832 | 3' | -51.8 | NC_005809.1 | + | 23432 | 0.7 | 0.596403 |
Target: 5'- uCUgGCUGACGGugUgggGGCCGAACa- -3' miRNA: 3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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