Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26833 | 5' | -54.2 | NC_005809.1 | + | 36314 | 1.09 | 0.000875 |
Target: 5'- cAGCGCGCAGAUCAACCGCACCGUUACc -3' miRNA: 3'- -UCGCGCGUCUAGUUGGCGUGGCAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 13391 | 0.79 | 0.126823 |
Target: 5'- cAGCGCGCGGuuguaGGCgGCAUCGUUGCg -3' miRNA: 3'- -UCGCGCGUCuag--UUGgCGUGGCAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 2134 | 0.78 | 0.130536 |
Target: 5'- cGUGCaGCAGccgGUCAACCGCGCCGccgUACa -3' miRNA: 3'- uCGCG-CGUC---UAGUUGGCGUGGCa--AUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 8785 | 0.77 | 0.173537 |
Target: 5'- cGCgGCGCAcgaugGGUCGGCCGCGCCGgucagUACc -3' miRNA: 3'- uCG-CGCGU-----CUAGUUGGCGUGGCa----AUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 29575 | 0.75 | 0.210767 |
Target: 5'- -uCGCGuCAGGUCGGCCGCGCCcagGCg -3' miRNA: 3'- ucGCGC-GUCUAGUUGGCGUGGcaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 13942 | 0.75 | 0.216615 |
Target: 5'- uGCGCGCGGAacuggccggccUCAuCCGCGCCGg--- -3' miRNA: 3'- uCGCGCGUCU-----------AGUuGGCGUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 7903 | 0.75 | 0.228729 |
Target: 5'- cGUGCGUAGAUCGccaGCUGC-UCGUUGCg -3' miRNA: 3'- uCGCGCGUCUAGU---UGGCGuGGCAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 21401 | 0.75 | 0.234998 |
Target: 5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3' miRNA: 3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28159 | 0.74 | 0.261525 |
Target: 5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3' miRNA: 3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 30190 | 0.74 | 0.268527 |
Target: 5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3' miRNA: 3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 21962 | 0.73 | 0.27568 |
Target: 5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3' miRNA: 3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28236 | 0.73 | 0.298049 |
Target: 5'- -aCGCGCGGGUCgGACUGCGCCaggcucaccauGUUGCg -3' miRNA: 3'- ucGCGCGUCUAG-UUGGCGUGG-----------CAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 23127 | 0.72 | 0.330026 |
Target: 5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3' miRNA: 3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 27824 | 0.71 | 0.382588 |
Target: 5'- cGCGCGCGcugcccgcGGUggcgcCGGCCGCGCCGcUGCu -3' miRNA: 3'- uCGCGCGU--------CUA-----GUUGGCGUGGCaAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 833 | 0.71 | 0.382588 |
Target: 5'- cGCGCGCAGAgacagCgAGCCG-ACCGUgGCc -3' miRNA: 3'- uCGCGCGUCUa----G-UUGGCgUGGCAaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 605 | 0.71 | 0.391873 |
Target: 5'- cGCcUGCGGGUCGGCCagcaGCGCCGUggACa -3' miRNA: 3'- uCGcGCGUCUAGUUGG----CGUGGCAa-UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 4036 | 0.71 | 0.391873 |
Target: 5'- uGcCGCGCGGGUCGAgCGCAgCCGg--- -3' miRNA: 3'- uC-GCGCGUCUAGUUgGCGU-GGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 33359 | 0.71 | 0.410878 |
Target: 5'- cGCGcCGCAGAaCGugcGCCGCGCCGc--- -3' miRNA: 3'- uCGC-GCGUCUaGU---UGGCGUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28333 | 0.71 | 0.410878 |
Target: 5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3' miRNA: 3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 3548 | 0.71 | 0.410878 |
Target: 5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3' miRNA: 3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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