Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26833 | 5' | -54.2 | NC_005809.1 | + | 15448 | 0.7 | 0.44043 |
Target: 5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3' miRNA: 3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 15588 | 0.7 | 0.44043 |
Target: 5'- cGCGCuGCGGAUgcACCGCGCCa---- -3' miRNA: 3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 23742 | 0.69 | 0.470113 |
Target: 5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3' miRNA: 3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 11431 | 0.69 | 0.481636 |
Target: 5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3' miRNA: 3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28573 | 0.69 | 0.481636 |
Target: 5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3' miRNA: 3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 31376 | 0.69 | 0.481636 |
Target: 5'- -aUGCGCGGcAUUGACCGCACCa---- -3' miRNA: 3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 35027 | 0.69 | 0.49223 |
Target: 5'- uGGCGcCGCAGAUCgAGCaCGcCGCCGa--- -3' miRNA: 3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 22081 | 0.69 | 0.512645 |
Target: 5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3' miRNA: 3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28940 | 0.69 | 0.513729 |
Target: 5'- cGGCGCGcCGGAcuugCuGCCGCuACCGaUGCu -3' miRNA: 3'- -UCGCGC-GUCUa---GuUGGCG-UGGCaAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28076 | 0.69 | 0.513729 |
Target: 5'- cAGCGgGCAGGU-GGCCGCGgCGUc-- -3' miRNA: 3'- -UCGCgCGUCUAgUUGGCGUgGCAaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 29402 | 0.69 | 0.524623 |
Target: 5'- gGGCGCcCAGcgCGGCCGaCACUGgccgACa -3' miRNA: 3'- -UCGCGcGUCuaGUUGGC-GUGGCaa--UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 31216 | 0.69 | 0.524623 |
Target: 5'- gGGCGaGCAGGUCGccACCGUACUGc--- -3' miRNA: 3'- -UCGCgCGUCUAGU--UGGCGUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 14642 | 0.69 | 0.524623 |
Target: 5'- cGGUGCGCAGAUUGAUaccuUGCACCuugGCc -3' miRNA: 3'- -UCGCGCGUCUAGUUG----GCGUGGcaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 8144 | 0.69 | 0.524623 |
Target: 5'- gGGCGUGCGGGugUCGG-CGCugCGUcccUGCg -3' miRNA: 3'- -UCGCGCGUCU--AGUUgGCGugGCA---AUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 29006 | 0.69 | 0.524623 |
Target: 5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3' miRNA: 3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 23655 | 0.68 | 0.535603 |
Target: 5'- cGGCGgGCAG--CAACUGCACCag-GCg -3' miRNA: 3'- -UCGCgCGUCuaGUUGGCGUGGcaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 14270 | 0.68 | 0.535603 |
Target: 5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3' miRNA: 3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 34936 | 0.68 | 0.535603 |
Target: 5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3' miRNA: 3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 2579 | 0.68 | 0.535603 |
Target: 5'- cAGCGCGUGcGcgCGcuuGCCGCcCUGUUGCa -3' miRNA: 3'- -UCGCGCGU-CuaGU---UGGCGuGGCAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 31757 | 0.68 | 0.535603 |
Target: 5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3' miRNA: 3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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