Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26833 | 5' | -54.2 | NC_005809.1 | + | 11142 | 0.66 | 0.648359 |
Target: 5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3' miRNA: 3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 13972 | 0.67 | 0.636982 |
Target: 5'- aAGCGCGUAGGUCuuguACuCGCugGCCucgUGCu -3' miRNA: 3'- -UCGCGCGUCUAGu---UG-GCG--UGGca-AUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 25801 | 0.67 | 0.636982 |
Target: 5'- cGGCGCGCucGGuAUCGuugauCUGCACCGg--- -3' miRNA: 3'- -UCGCGCG--UC-UAGUu----GGCGUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 19858 | 0.67 | 0.636982 |
Target: 5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3' miRNA: 3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 7973 | 0.67 | 0.636982 |
Target: 5'- cGGCGCGCA--UCGgguuuccaugucGCCGCGCuCGuUUGCc -3' miRNA: 3'- -UCGCGCGUcuAGU------------UGGCGUG-GC-AAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28268 | 0.67 | 0.636982 |
Target: 5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3' miRNA: 3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 22025 | 0.67 | 0.6256 |
Target: 5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3' miRNA: 3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 6175 | 0.67 | 0.614225 |
Target: 5'- cAGCGCagGCcGGUCuuGCCGCAgCGuUUGCa -3' miRNA: 3'- -UCGCG--CGuCUAGu-UGGCGUgGC-AAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 27419 | 0.67 | 0.602865 |
Target: 5'- cGCGCGCcuGGcgC-ACCGCGCCcg-GCg -3' miRNA: 3'- uCGCGCG--UCuaGuUGGCGUGGcaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 37621 | 0.68 | 0.557793 |
Target: 5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3' miRNA: 3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 27796 | 0.68 | 0.557793 |
Target: 5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3' miRNA: 3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 20618 | 0.68 | 0.557793 |
Target: 5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3' miRNA: 3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 35490 | 0.68 | 0.557793 |
Target: 5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3' miRNA: 3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 11177 | 0.68 | 0.546662 |
Target: 5'- cGUGCGCuGGUCGGCCGUGgUGauggUGCg -3' miRNA: 3'- uCGCGCGuCUAGUUGGCGUgGCa---AUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 32576 | 0.68 | 0.546662 |
Target: 5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3' miRNA: 3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 16763 | 0.68 | 0.546662 |
Target: 5'- cGGCccgGUGCAGAUCAACgauaccgagCGCGCCGcgcGCa -3' miRNA: 3'- -UCG---CGCGUCUAGUUG---------GCGUGGCaa-UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 23417 | 0.68 | 0.545553 |
Target: 5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3' miRNA: 3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 34936 | 0.68 | 0.535603 |
Target: 5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3' miRNA: 3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 31757 | 0.68 | 0.535603 |
Target: 5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3' miRNA: 3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 23655 | 0.68 | 0.535603 |
Target: 5'- cGGCGgGCAG--CAACUGCACCag-GCg -3' miRNA: 3'- -UCGCgCGUCuaGUUGGCGUGGcaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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