miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26833 5' -54.2 NC_005809.1 + 11142 0.66 0.648359
Target:  5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3'
miRNA:   3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5'
26833 5' -54.2 NC_005809.1 + 11177 0.68 0.546662
Target:  5'- cGUGCGCuGGUCGGCCGUGgUGauggUGCg -3'
miRNA:   3'- uCGCGCGuCUAGUUGGCGUgGCa---AUG- -5'
26833 5' -54.2 NC_005809.1 + 11431 0.69 0.481636
Target:  5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3'
miRNA:   3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5'
26833 5' -54.2 NC_005809.1 + 11586 0.66 0.704773
Target:  5'- cGCGCgugaGCAGAUCGuccACCGUcacGCCGa--- -3'
miRNA:   3'- uCGCG----CGUCUAGU---UGGCG---UGGCaaug -5'
26833 5' -54.2 NC_005809.1 + 13391 0.79 0.126823
Target:  5'- cAGCGCGCGGuuguaGGCgGCAUCGUUGCg -3'
miRNA:   3'- -UCGCGCGUCuag--UUGgCGUGGCAAUG- -5'
26833 5' -54.2 NC_005809.1 + 13816 0.66 0.648359
Target:  5'- uGCGCGCcGAgaagCGcACCGCGCUGg--- -3'
miRNA:   3'- uCGCGCGuCUa---GU-UGGCGUGGCaaug -5'
26833 5' -54.2 NC_005809.1 + 13942 0.75 0.216615
Target:  5'- uGCGCGCGGAacuggccggccUCAuCCGCGCCGg--- -3'
miRNA:   3'- uCGCGCGUCU-----------AGUuGGCGUGGCaaug -5'
26833 5' -54.2 NC_005809.1 + 13972 0.67 0.636982
Target:  5'- aAGCGCGUAGGUCuuguACuCGCugGCCucgUGCu -3'
miRNA:   3'- -UCGCGCGUCUAGu---UG-GCG--UGGca-AUG- -5'
26833 5' -54.2 NC_005809.1 + 14270 0.68 0.535603
Target:  5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3'
miRNA:   3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5'
26833 5' -54.2 NC_005809.1 + 14642 0.69 0.524623
Target:  5'- cGGUGCGCAGAUUGAUaccuUGCACCuugGCc -3'
miRNA:   3'- -UCGCGCGUCUAGUUG----GCGUGGcaaUG- -5'
26833 5' -54.2 NC_005809.1 + 15448 0.7 0.44043
Target:  5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3'
miRNA:   3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5'
26833 5' -54.2 NC_005809.1 + 15588 0.7 0.44043
Target:  5'- cGCGCuGCGGAUgcACCGCGCCa---- -3'
miRNA:   3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5'
26833 5' -54.2 NC_005809.1 + 16763 0.68 0.546662
Target:  5'- cGGCccgGUGCAGAUCAACgauaccgagCGCGCCGcgcGCa -3'
miRNA:   3'- -UCG---CGCGUCUAGUUG---------GCGUGGCaa-UG- -5'
26833 5' -54.2 NC_005809.1 + 17804 0.66 0.704773
Target:  5'- cGCGCGCAGuauUCcGCCuGCACgGa--- -3'
miRNA:   3'- uCGCGCGUCu--AGuUGG-CGUGgCaaug -5'
26833 5' -54.2 NC_005809.1 + 18414 0.66 0.682349
Target:  5'- aAGCGCGCAGccGUCGaggcGCUGgGCCaGgcGCg -3'
miRNA:   3'- -UCGCGCGUC--UAGU----UGGCgUGG-CaaUG- -5'
26833 5' -54.2 NC_005809.1 + 18467 0.66 0.681222
Target:  5'- cGGCGCcgGCGGcGUCGGCCGauucgucCACCGUgaugACc -3'
miRNA:   3'- -UCGCG--CGUC-UAGUUGGC-------GUGGCAa---UG- -5'
26833 5' -54.2 NC_005809.1 + 19858 0.67 0.636982
Target:  5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3'
miRNA:   3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5'
26833 5' -54.2 NC_005809.1 + 19968 0.66 0.656315
Target:  5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3'
miRNA:   3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5'
26833 5' -54.2 NC_005809.1 + 20618 0.68 0.557793
Target:  5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3'
miRNA:   3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5'
26833 5' -54.2 NC_005809.1 + 21401 0.75 0.234998
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.