Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26833 | 5' | -54.2 | NC_005809.1 | + | 41482 | 0.66 | 0.648359 |
Target: 5'- cGCGCGacacggccaAGGcaaUCuACCGCGCgCGUUACu -3' miRNA: 3'- uCGCGCg--------UCU---AGuUGGCGUG-GCAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 37621 | 0.68 | 0.557793 |
Target: 5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3' miRNA: 3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 36314 | 1.09 | 0.000875 |
Target: 5'- cAGCGCGCAGAUCAACCGCACCGUUACc -3' miRNA: 3'- -UCGCGCGUCUAGUUGGCGUGGCAAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 35490 | 0.68 | 0.557793 |
Target: 5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3' miRNA: 3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 35027 | 0.69 | 0.49223 |
Target: 5'- uGGCGcCGCAGAUCgAGCaCGcCGCCGa--- -3' miRNA: 3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 34936 | 0.68 | 0.535603 |
Target: 5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3' miRNA: 3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 34738 | 0.66 | 0.681222 |
Target: 5'- cGUGCGCcuGGUCAucgugcaGCCGCGCCu---- -3' miRNA: 3'- uCGCGCGu-CUAGU-------UGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 33359 | 0.71 | 0.410878 |
Target: 5'- cGCGcCGCAGAaCGugcGCCGCGCCGc--- -3' miRNA: 3'- uCGC-GCGUCUaGU---UGGCGUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 32576 | 0.68 | 0.546662 |
Target: 5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3' miRNA: 3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 31757 | 0.68 | 0.535603 |
Target: 5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3' miRNA: 3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 31376 | 0.69 | 0.481636 |
Target: 5'- -aUGCGCGGcAUUGACCGCACCa---- -3' miRNA: 3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 31216 | 0.69 | 0.524623 |
Target: 5'- gGGCGaGCAGGUCGccACCGUACUGc--- -3' miRNA: 3'- -UCGCgCGUCUAGU--UGGCGUGGCaaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 30190 | 0.74 | 0.268527 |
Target: 5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3' miRNA: 3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 29575 | 0.75 | 0.210767 |
Target: 5'- -uCGCGuCAGGUCGGCCGCGCCcagGCg -3' miRNA: 3'- ucGCGC-GUCUAGUUGGCGUGGcaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 29507 | 0.66 | 0.704773 |
Target: 5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3' miRNA: 3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 29402 | 0.69 | 0.524623 |
Target: 5'- gGGCGCcCAGcgCGGCCGaCACUGgccgACa -3' miRNA: 3'- -UCGCGcGUCuaGUUGGC-GUGGCaa--UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 29006 | 0.69 | 0.524623 |
Target: 5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3' miRNA: 3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28940 | 0.69 | 0.513729 |
Target: 5'- cGGCGCGcCGGAcuugCuGCCGCuACCGaUGCu -3' miRNA: 3'- -UCGCGC-GUCUa---GuUGGCG-UGGCaAUG- -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28573 | 0.69 | 0.481636 |
Target: 5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3' miRNA: 3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5' |
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26833 | 5' | -54.2 | NC_005809.1 | + | 28333 | 0.71 | 0.410878 |
Target: 5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3' miRNA: 3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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