miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26833 5' -54.2 NC_005809.1 + 36314 1.09 0.000875
Target:  5'- cAGCGCGCAGAUCAACCGCACCGUUACc -3'
miRNA:   3'- -UCGCGCGUCUAGUUGGCGUGGCAAUG- -5'
26833 5' -54.2 NC_005809.1 + 2579 0.68 0.535603
Target:  5'- cAGCGCGUGcGcgCGcuuGCCGCcCUGUUGCa -3'
miRNA:   3'- -UCGCGCGU-CuaGU---UGGCGuGGCAAUG- -5'
26833 5' -54.2 NC_005809.1 + 14270 0.68 0.535603
Target:  5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3'
miRNA:   3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5'
26833 5' -54.2 NC_005809.1 + 29507 0.66 0.704773
Target:  5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3'
miRNA:   3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5'
26833 5' -54.2 NC_005809.1 + 30190 0.74 0.268527
Target:  5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5'
26833 5' -54.2 NC_005809.1 + 23127 0.72 0.330026
Target:  5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3'
miRNA:   3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5'
26833 5' -54.2 NC_005809.1 + 28333 0.71 0.410878
Target:  5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3'
miRNA:   3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5'
26833 5' -54.2 NC_005809.1 + 33359 0.71 0.410878
Target:  5'- cGCGcCGCAGAaCGugcGCCGCGCCGc--- -3'
miRNA:   3'- uCGC-GCGUCUaGU---UGGCGUGGCaaug -5'
26833 5' -54.2 NC_005809.1 + 31376 0.69 0.481636
Target:  5'- -aUGCGCGGcAUUGACCGCACCa---- -3'
miRNA:   3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5'
26833 5' -54.2 NC_005809.1 + 34936 0.68 0.535603
Target:  5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3'
miRNA:   3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5'
26833 5' -54.2 NC_005809.1 + 29402 0.69 0.524623
Target:  5'- gGGCGCcCAGcgCGGCCGaCACUGgccgACa -3'
miRNA:   3'- -UCGCGcGUCuaGUUGGC-GUGGCaa--UG- -5'
26833 5' -54.2 NC_005809.1 + 15448 0.7 0.44043
Target:  5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3'
miRNA:   3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5'
26833 5' -54.2 NC_005809.1 + 13942 0.75 0.216615
Target:  5'- uGCGCGCGGAacuggccggccUCAuCCGCGCCGg--- -3'
miRNA:   3'- uCGCGCGUCU-----------AGUuGGCGUGGCaaug -5'
26833 5' -54.2 NC_005809.1 + 31216 0.69 0.524623
Target:  5'- gGGCGaGCAGGUCGccACCGUACUGc--- -3'
miRNA:   3'- -UCGCgCGUCUAGU--UGGCGUGGCaaug -5'
26833 5' -54.2 NC_005809.1 + 7903 0.75 0.228729
Target:  5'- cGUGCGUAGAUCGccaGCUGC-UCGUUGCg -3'
miRNA:   3'- uCGCGCGUCUAGU---UGGCGuGGCAAUG- -5'
26833 5' -54.2 NC_005809.1 + 3548 0.71 0.410878
Target:  5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3'
miRNA:   3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5'
26833 5' -54.2 NC_005809.1 + 29006 0.69 0.524623
Target:  5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3'
miRNA:   3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5'
26833 5' -54.2 NC_005809.1 + 31757 0.68 0.535603
Target:  5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3'
miRNA:   3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5'
26833 5' -54.2 NC_005809.1 + 21401 0.75 0.234998
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5'
26833 5' -54.2 NC_005809.1 + 833 0.71 0.382588
Target:  5'- cGCGCGCAGAgacagCgAGCCG-ACCGUgGCc -3'
miRNA:   3'- uCGCGCGUCUa----G-UUGGCgUGGCAaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.