miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26835 3' -55.3 NC_005809.1 + 35257 1.12 0.000418
Target:  5'- cUGCUGCGUUCGCAGACCAUCGACGGCg -3'
miRNA:   3'- -ACGACGCAAGCGUCUGGUAGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 34107 0.81 0.075491
Target:  5'- gGCUGCGgcaUCGCAGGCCAccUCGACGcCg -3'
miRNA:   3'- aCGACGCa--AGCGUCUGGU--AGCUGCcG- -5'
26835 3' -55.3 NC_005809.1 + 33375 0.76 0.17282
Target:  5'- cGCcGCGccgccgaGCAGGCCAacgUCGACGGCg -3'
miRNA:   3'- aCGaCGCaag----CGUCUGGU---AGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 20762 0.74 0.226808
Target:  5'- cGCUGCGccgCGCucGACuCAUCGcGCGGCu -3'
miRNA:   3'- aCGACGCaa-GCGu-CUG-GUAGC-UGCCG- -5'
26835 3' -55.3 NC_005809.1 + 14825 0.74 0.23919
Target:  5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3'
miRNA:   3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 20728 0.72 0.29442
Target:  5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3'
miRNA:   3'- acGACGCaa---GCGUCUGGUAGCUGccg -5'
26835 3' -55.3 NC_005809.1 + 28553 0.72 0.317556
Target:  5'- -cUUGCGgcCGCcGGCCAUCG-CGGCg -3'
miRNA:   3'- acGACGCaaGCGuCUGGUAGCuGCCG- -5'
26835 3' -55.3 NC_005809.1 + 40683 0.71 0.333726
Target:  5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3'
miRNA:   3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5'
26835 3' -55.3 NC_005809.1 + 1924 0.71 0.342034
Target:  5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3'
miRNA:   3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5'
26835 3' -55.3 NC_005809.1 + 26801 0.71 0.342034
Target:  5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3'
miRNA:   3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 12426 0.71 0.35049
Target:  5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3'
miRNA:   3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 22413 0.71 0.359095
Target:  5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3'
miRNA:   3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 1145 0.71 0.367845
Target:  5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3'
miRNA:   3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 4811 0.71 0.376741
Target:  5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3'
miRNA:   3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5'
26835 3' -55.3 NC_005809.1 + 26169 0.7 0.404286
Target:  5'- cUGCgaUGCGgUCGCAGAUUucgguggCGAUGGCu -3'
miRNA:   3'- -ACG--ACGCaAGCGUCUGGua-----GCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 14517 0.7 0.409945
Target:  5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3'
miRNA:   3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5'
26835 3' -55.3 NC_005809.1 + 6194 0.7 0.413746
Target:  5'- cGCaGCGUUUGCAGG----UGACGGCg -3'
miRNA:   3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 27154 0.7 0.42334
Target:  5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3'
miRNA:   3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5'
26835 3' -55.3 NC_005809.1 + 30725 0.69 0.433068
Target:  5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3'
miRNA:   3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5'
26835 3' -55.3 NC_005809.1 + 38464 0.69 0.433068
Target:  5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3'
miRNA:   3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.