Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26835 | 3' | -55.3 | NC_005809.1 | + | 1145 | 0.71 | 0.367845 |
Target: 5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3' miRNA: 3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 1680 | 0.68 | 0.541056 |
Target: 5'- aUGCUGCcg-CGCAGguagucgagaaauucGCCGUgGGcCGGCg -3' miRNA: 3'- -ACGACGcaaGCGUC---------------UGGUAgCU-GCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 1924 | 0.71 | 0.342034 |
Target: 5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3' miRNA: 3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 2518 | 0.67 | 0.547596 |
Target: 5'- gGCgggGCuucgGUUCGUAGACCAggaauUCG-CGGUa -3' miRNA: 3'- aCGa--CG----CAAGCGUCUGGU-----AGCuGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 4522 | 0.67 | 0.55855 |
Target: 5'- cGCUugaGCGcaUCGCAGACCA-CGAaGGUc -3' miRNA: 3'- aCGA---CGCa-AGCGUCUGGUaGCUgCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 4811 | 0.71 | 0.376741 |
Target: 5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3' miRNA: 3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 5276 | 0.67 | 0.591745 |
Target: 5'- gUGUUGaUGUUCGCGGcGuuGUCGgccACGGCg -3' miRNA: 3'- -ACGAC-GCAAGCGUC-UggUAGC---UGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 5841 | 0.66 | 0.647643 |
Target: 5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3' miRNA: 3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 6194 | 0.7 | 0.413746 |
Target: 5'- cGCaGCGUUUGCAGG----UGACGGCg -3' miRNA: 3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 7295 | 0.69 | 0.463008 |
Target: 5'- cGUaGUGcUCGCGGauggcGCCGUCGAUGGUc -3' miRNA: 3'- aCGaCGCaAGCGUC-----UGGUAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 8187 | 0.66 | 0.640929 |
Target: 5'- aUGCUGCcggcgauuucaucgCGCAcGGCCucguagucgcgcugGUCGGCGGCc -3' miRNA: 3'- -ACGACGcaa-----------GCGU-CUGG--------------UAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 8428 | 0.68 | 0.525901 |
Target: 5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3' miRNA: 3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 8559 | 0.66 | 0.655469 |
Target: 5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3' miRNA: 3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 8633 | 0.69 | 0.483559 |
Target: 5'- cGCUGCGguggcgaggUCGCcGGCCuucAUCGcGCGGUc -3' miRNA: 3'- aCGACGCa--------AGCGuCUGG---UAGC-UGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 8878 | 0.66 | 0.640929 |
Target: 5'- cGaaGCGggCGCGGGCauCAuugugaauggcgcuaUCGGCGGCg -3' miRNA: 3'- aCgaCGCaaGCGUCUG--GU---------------AGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 9960 | 0.66 | 0.633093 |
Target: 5'- cGCgGCG-UCGCggcccuugaccGGGCCAgcuuggucacagcgUCGGCGGUg -3' miRNA: 3'- aCGaCGCaAGCG-----------UCUGGU--------------AGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 10202 | 0.68 | 0.504538 |
Target: 5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3' miRNA: 3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 11172 | 0.68 | 0.525901 |
Target: 5'- cGUUGCGUgCGCuggucGGCCGUggUGAUGGUg -3' miRNA: 3'- aCGACGCAaGCGu----CUGGUA--GCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 12426 | 0.71 | 0.35049 |
Target: 5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3' miRNA: 3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5' |
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26835 | 3' | -55.3 | NC_005809.1 | + | 14350 | 0.68 | 0.536711 |
Target: 5'- cUGCUG-GUUCGCGGuguCCuggaaggCGGgGGCa -3' miRNA: 3'- -ACGACgCAAGCGUCu--GGua-----GCUgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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