miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26835 5' -59.3 NC_005809.1 + 14228 0.66 0.412929
Target:  5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3'
miRNA:   3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5'
26835 5' -59.3 NC_005809.1 + 15140 0.79 0.055981
Target:  5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3'
miRNA:   3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5'
26835 5' -59.3 NC_005809.1 + 15584 0.66 0.441312
Target:  5'- aCGAcGCGCUGCGGaugcaCCgCGccaucGGCCAGGa -3'
miRNA:   3'- -GCU-CGUGAUGCCg----GG-GCu----CCGGUUCg -5'
26835 5' -59.3 NC_005809.1 + 16104 0.66 0.441312
Target:  5'- cCGAauGCcaaACUgACGGaUgCCGAGGUCGAGCg -3'
miRNA:   3'- -GCU--CG---UGA-UGCC-GgGGCUCCGGUUCG- -5'
26835 5' -59.3 NC_005809.1 + 16574 0.66 0.441312
Target:  5'- uGuAGCGCgACGcGCCggaCGAGGCCGAccacGCg -3'
miRNA:   3'- gC-UCGUGaUGC-CGGg--GCUCCGGUU----CG- -5'
26835 5' -59.3 NC_005809.1 + 17436 0.73 0.146062
Target:  5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3'
miRNA:   3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5'
26835 5' -59.3 NC_005809.1 + 18839 0.69 0.268246
Target:  5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3'
miRNA:   3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5'
26835 5' -59.3 NC_005809.1 + 19341 0.7 0.230031
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26835 5' -59.3 NC_005809.1 + 21316 0.67 0.359685
Target:  5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3'
miRNA:   3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5'
26835 5' -59.3 NC_005809.1 + 21326 0.66 0.431727
Target:  5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3'
miRNA:   3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5'
26835 5' -59.3 NC_005809.1 + 22341 0.67 0.385701
Target:  5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3'
miRNA:   3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5'
26835 5' -59.3 NC_005809.1 + 22424 0.67 0.359685
Target:  5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3'
miRNA:   3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5'
26835 5' -59.3 NC_005809.1 + 23873 0.7 0.224128
Target:  5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3'
miRNA:   3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5'
26835 5' -59.3 NC_005809.1 + 24013 0.68 0.334116
Target:  5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3'
miRNA:   3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5'
26835 5' -59.3 NC_005809.1 + 26846 0.68 0.343035
Target:  5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5'
26835 5' -59.3 NC_005809.1 + 27199 0.66 0.441312
Target:  5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3'
miRNA:   3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5'
26835 5' -59.3 NC_005809.1 + 27645 0.74 0.138262
Target:  5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3'
miRNA:   3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5'
26835 5' -59.3 NC_005809.1 + 27870 0.67 0.394645
Target:  5'- aGGGCAUggaGGCgcaaCUGcAGGCCGGGCu -3'
miRNA:   3'- gCUCGUGaugCCGg---GGC-UCCGGUUCG- -5'
26835 5' -59.3 NC_005809.1 + 29076 0.68 0.326947
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26835 5' -59.3 NC_005809.1 + 29824 0.69 0.282785
Target:  5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3'
miRNA:   3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.