Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 1314 | 0.68 | 0.319115 |
Target: 5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3' miRNA: 3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 1462 | 0.67 | 0.35129 |
Target: 5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3' miRNA: 3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 1960 | 0.8 | 0.045731 |
Target: 5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 4883 | 0.67 | 0.394645 |
Target: 5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3' miRNA: 3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 7138 | 0.71 | 0.212149 |
Target: 5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3' miRNA: 3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 7276 | 0.67 | 0.376892 |
Target: 5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3' miRNA: 3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 7386 | 0.68 | 0.342217 |
Target: 5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3' miRNA: 3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 8269 | 0.69 | 0.282078 |
Target: 5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3' miRNA: 3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 8422 | 0.74 | 0.120409 |
Target: 5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3' miRNA: 3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 9526 | 0.73 | 0.150111 |
Target: 5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3' miRNA: 3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 9705 | 0.75 | 0.11075 |
Target: 5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3' miRNA: 3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 10485 | 0.7 | 0.236066 |
Target: 5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3' miRNA: 3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 10676 | 0.67 | 0.385701 |
Target: 5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3' miRNA: 3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 10969 | 0.66 | 0.431727 |
Target: 5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3' miRNA: 3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 11037 | 0.67 | 0.385701 |
Target: 5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3' miRNA: 3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 11268 | 0.72 | 0.176134 |
Target: 5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3' miRNA: 3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 11325 | 0.66 | 0.451017 |
Target: 5'- uCGGGCAgaACGGCCCauucguucAGGUCuuGCa -3' miRNA: 3'- -GCUCGUgaUGCCGGGgc------UCCGGuuCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 12580 | 0.67 | 0.36822 |
Target: 5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3' miRNA: 3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 12810 | 0.68 | 0.319115 |
Target: 5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3' miRNA: 3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 13027 | 0.67 | 0.371672 |
Target: 5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3' miRNA: 3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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