Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 10969 | 0.66 | 0.431727 |
Target: 5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3' miRNA: 3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 42188 | 0.68 | 0.326947 |
Target: 5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3' miRNA: 3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 31238 | 0.68 | 0.33492 |
Target: 5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3' miRNA: 3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 1462 | 0.67 | 0.35129 |
Target: 5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3' miRNA: 3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 37269 | 0.67 | 0.358839 |
Target: 5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3' miRNA: 3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 21316 | 0.67 | 0.359685 |
Target: 5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3' miRNA: 3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 7276 | 0.67 | 0.376892 |
Target: 5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3' miRNA: 3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 4883 | 0.67 | 0.394645 |
Target: 5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3' miRNA: 3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 35416 | 0.66 | 0.421326 |
Target: 5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3' miRNA: 3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 29076 | 0.68 | 0.326947 |
Target: 5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3' miRNA: 3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 1314 | 0.68 | 0.319115 |
Target: 5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3' miRNA: 3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 34212 | 0.69 | 0.282078 |
Target: 5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 34879 | 0.76 | 0.098998 |
Target: 5'- -cGGCAagcCGGCCgCCGAGGUCAAGCc -3' miRNA: 3'- gcUCGUgauGCCGG-GGCUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 8422 | 0.74 | 0.120409 |
Target: 5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3' miRNA: 3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 17436 | 0.73 | 0.146062 |
Target: 5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3' miRNA: 3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 9526 | 0.73 | 0.150111 |
Target: 5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3' miRNA: 3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 11268 | 0.72 | 0.176134 |
Target: 5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3' miRNA: 3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 36219 | 0.71 | 0.196515 |
Target: 5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3' miRNA: 3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 35517 | 0.7 | 0.230031 |
Target: 5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3' miRNA: 3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 32355 | 0.69 | 0.268246 |
Target: 5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3' miRNA: 3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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