Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 35291 | 1.12 | 0.000183 |
Target: 5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3' miRNA: 3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 1960 | 0.8 | 0.045731 |
Target: 5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 15140 | 0.79 | 0.055981 |
Target: 5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3' miRNA: 3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 30092 | 0.78 | 0.070229 |
Target: 5'- cCGGGCGCcACGGCCCUugucccaggcgauGAGGCCGcGCc -3' miRNA: 3'- -GCUCGUGaUGCCGGGG-------------CUCCGGUuCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 34879 | 0.76 | 0.098998 |
Target: 5'- -cGGCAagcCGGCCgCCGAGGUCAAGCc -3' miRNA: 3'- gcUCGUgauGCCGG-GGCUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 9705 | 0.75 | 0.11075 |
Target: 5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3' miRNA: 3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 8422 | 0.74 | 0.120409 |
Target: 5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3' miRNA: 3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 27645 | 0.74 | 0.138262 |
Target: 5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3' miRNA: 3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 17436 | 0.73 | 0.146062 |
Target: 5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3' miRNA: 3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 9526 | 0.73 | 0.150111 |
Target: 5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3' miRNA: 3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 30972 | 0.72 | 0.17192 |
Target: 5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3' miRNA: 3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 11268 | 0.72 | 0.176134 |
Target: 5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3' miRNA: 3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 36219 | 0.71 | 0.196515 |
Target: 5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3' miRNA: 3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 7138 | 0.71 | 0.212149 |
Target: 5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3' miRNA: 3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 23873 | 0.7 | 0.224128 |
Target: 5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3' miRNA: 3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 35517 | 0.7 | 0.230031 |
Target: 5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3' miRNA: 3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 19341 | 0.7 | 0.230031 |
Target: 5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3' miRNA: 3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 10485 | 0.7 | 0.236066 |
Target: 5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3' miRNA: 3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 34000 | 0.7 | 0.247896 |
Target: 5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3' miRNA: 3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5' |
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26835 | 5' | -59.3 | NC_005809.1 | + | 31423 | 0.7 | 0.254967 |
Target: 5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3' miRNA: 3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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