Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26836 | 5' | -57.7 | NC_005809.1 | + | 34337 | 1.12 | 0.000205 |
Target: 5'- uUGAAGCGCAAGCUGCUGACGGCCGCCg -3' miRNA: 3'- -ACUUCGCGUUCGACGACUGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 37419 | 0.8 | 0.050998 |
Target: 5'- -aGGGCGUGAGCaGC-GACGGCCGCCu -3' miRNA: 3'- acUUCGCGUUCGaCGaCUGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 3557 | 0.78 | 0.077768 |
Target: 5'- cGAauAGCGCAgcAGCggGCUGggcguacaccgauccGCGGCCGCCa -3' miRNA: 3'- aCU--UCGCGU--UCGa-CGAC---------------UGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 16945 | 0.77 | 0.096889 |
Target: 5'- cGAGGUGgAcgcGCUGCUGGCGccgcGCCGCCg -3' miRNA: 3'- aCUUCGCgUu--CGACGACUGC----CGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 2383 | 0.74 | 0.140218 |
Target: 5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3' miRNA: 3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 34663 | 0.73 | 0.170349 |
Target: 5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3' miRNA: 3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 13895 | 0.73 | 0.170349 |
Target: 5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3' miRNA: 3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 29500 | 0.73 | 0.1751 |
Target: 5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3' miRNA: 3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 23576 | 0.73 | 0.179968 |
Target: 5'- -cAGGUGCGGGCgggggGCgacGAUGGCCGUCa -3' miRNA: 3'- acUUCGCGUUCGa----CGa--CUGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 27969 | 0.73 | 0.184955 |
Target: 5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3' miRNA: 3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 32524 | 0.72 | 0.210057 |
Target: 5'- ---cGUGCAGGCUGgUGAUGccggccaggaugcuGCCGCCg -3' miRNA: 3'- acuuCGCGUUCGACgACUGC--------------CGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 21174 | 0.72 | 0.211755 |
Target: 5'- --cAGCGCGGcCUGCUGcGCGGCCuGCUg -3' miRNA: 3'- acuUCGCGUUcGACGAC-UGCCGG-CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 23874 | 0.72 | 0.211755 |
Target: 5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3' miRNA: 3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 15831 | 0.72 | 0.211755 |
Target: 5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3' miRNA: 3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 15064 | 0.71 | 0.229393 |
Target: 5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3' miRNA: 3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 18065 | 0.71 | 0.235543 |
Target: 5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3' miRNA: 3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 23110 | 0.71 | 0.248256 |
Target: 5'- --uGGCGCAAGCUGaacuaUGGCGuGCaGCCc -3' miRNA: 3'- acuUCGCGUUCGACg----ACUGC-CGgCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 28891 | 0.71 | 0.248256 |
Target: 5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3' miRNA: 3'- acuUCGCGuUCGACGACUGcCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 14864 | 0.71 | 0.248256 |
Target: 5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3' miRNA: 3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 25630 | 0.71 | 0.254823 |
Target: 5'- --cGGCgGCAcGCUGCUgGACGG-CGCCg -3' miRNA: 3'- acuUCG-CGUuCGACGA-CUGCCgGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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