Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26836 | 5' | -57.7 | NC_005809.1 | + | 2007 | 0.68 | 0.353406 |
Target: 5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3' miRNA: 3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 34858 | 0.69 | 0.301773 |
Target: 5'- -cGAGCGUgcGCUGCaGuucaucggcaagcCGGCCGCCg -3' miRNA: 3'- acUUCGCGuuCGACGaCu------------GCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 27494 | 0.69 | 0.304823 |
Target: 5'- cGAGGaUGCcGGCgGCcu-CGGCCGCCa -3' miRNA: 3'- aCUUC-GCGuUCGaCGacuGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 11133 | 0.69 | 0.320428 |
Target: 5'- ---cGUGCGAGCaguucggccUGCUGcugGGCCGCCu -3' miRNA: 3'- acuuCGCGUUCG---------ACGACug-CCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 41580 | 0.69 | 0.320428 |
Target: 5'- aGuGGCGCGGGCagcggGCUGACGGUgaaggGCUg -3' miRNA: 3'- aCuUCGCGUUCGa----CGACUGCCGg----CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 14900 | 0.69 | 0.320428 |
Target: 5'- gGGucuGCGCGGcgaucuGCUGCUGGcCGGCCucaaguGCCg -3' miRNA: 3'- aCUu--CGCGUU------CGACGACU-GCCGG------CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 41435 | 0.69 | 0.327642 |
Target: 5'- -cGAGCGCAAacggccGCUGCUcaugaucGACGGCaaGCCu -3' miRNA: 3'- acUUCGCGUU------CGACGA-------CUGCCGg-CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 28527 | 0.69 | 0.334156 |
Target: 5'- --cGGCGCu-GCuUGUUGaacggcacgaccuuGCGGCCGCCg -3' miRNA: 3'- acuUCGCGuuCG-ACGAC--------------UGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 37465 | 0.68 | 0.344941 |
Target: 5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3' miRNA: 3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 19026 | 0.7 | 0.289809 |
Target: 5'- gUGGGuGCGguAGCc-CUGguaGCGGCCGCCg -3' miRNA: 3'- -ACUU-CGCguUCGacGAC---UGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 25758 | 0.7 | 0.282521 |
Target: 5'- -uGGGCGC--GCUGCUgGGCGGCgGCa -3' miRNA: 3'- acUUCGCGuuCGACGA-CUGCCGgCGg -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 15639 | 0.7 | 0.282521 |
Target: 5'- cGAGGUGCuccAGGCcGCUGAuauggcuuacCGGCuCGCCc -3' miRNA: 3'- aCUUCGCG---UUCGaCGACU----------GCCG-GCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 3557 | 0.78 | 0.077768 |
Target: 5'- cGAauAGCGCAgcAGCggGCUGggcguacaccgauccGCGGCCGCCa -3' miRNA: 3'- aCU--UCGCGU--UCGa-CGAC---------------UGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 34663 | 0.73 | 0.170349 |
Target: 5'- -cGAGCGCAacgAGCaGCUGGCGaucuacgcacgcGCCGCCc -3' miRNA: 3'- acUUCGCGU---UCGaCGACUGC------------CGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 23576 | 0.73 | 0.179968 |
Target: 5'- -cAGGUGCGGGCgggggGCgacGAUGGCCGUCa -3' miRNA: 3'- acUUCGCGUUCGa----CGa--CUGCCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 32524 | 0.72 | 0.210057 |
Target: 5'- ---cGUGCAGGCUGgUGAUGccggccaggaugcuGCCGCCg -3' miRNA: 3'- acuuCGCGUUCGACgACUGC--------------CGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 21174 | 0.72 | 0.211755 |
Target: 5'- --cAGCGCGGcCUGCUGcGCGGCCuGCUg -3' miRNA: 3'- acuUCGCGUUcGACGAC-UGCCGG-CGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 18065 | 0.71 | 0.235543 |
Target: 5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3' miRNA: 3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 28891 | 0.71 | 0.248256 |
Target: 5'- --uGGCGU-AGUUGCUGGCcGUCGCCg -3' miRNA: 3'- acuUCGCGuUCGACGACUGcCGGCGG- -5' |
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26836 | 5' | -57.7 | NC_005809.1 | + | 4271 | 0.7 | 0.268384 |
Target: 5'- --cAGCGCcGGCaUGgUGAUGGCCGUg -3' miRNA: 3'- acuUCGCGuUCG-ACgACUGCCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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