miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26837 3' -56.4 NC_005809.1 + 33641 1.08 0.000603
Target:  5'- gUUCGGCGAACUGUCCACGCCCGAAGCc -3'
miRNA:   3'- -AAGCCGCUUGACAGGUGCGGGCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 31026 0.68 0.457446
Target:  5'- -cCGGCGGGCaGUCCuaucaggAUGCCCGcucGCa -3'
miRNA:   3'- aaGCCGCUUGaCAGG-------UGCGGGCuu-CG- -5'
26837 3' -56.4 NC_005809.1 + 14436 0.67 0.510271
Target:  5'- -cCGGCaAGCUG-CUGcCGCCCGAccaGGCg -3'
miRNA:   3'- aaGCCGcUUGACaGGU-GCGGGCU---UCG- -5'
26837 3' -56.4 NC_005809.1 + 35143 0.66 0.586464
Target:  5'- gUCGaG-GAAgUGUCCggGCGCCCGcuGCu -3'
miRNA:   3'- aAGC-CgCUUgACAGG--UGCGGGCuuCG- -5'
26837 3' -56.4 NC_005809.1 + 19950 0.72 0.256137
Target:  5'- aUCaGCGAcuACUGcugCCGCGCgCGggGCg -3'
miRNA:   3'- aAGcCGCU--UGACa--GGUGCGgGCuuCG- -5'
26837 3' -56.4 NC_005809.1 + 15302 0.71 0.304185
Target:  5'- -gCGGCGAACUgcgGUUCAUugccucggccaagaGCCUGggGCg -3'
miRNA:   3'- aaGCCGCUUGA---CAGGUG--------------CGGGCuuCG- -5'
26837 3' -56.4 NC_005809.1 + 31981 0.7 0.336855
Target:  5'- -gCGGUGcaGGCUGcgcgccuggguaCUACGCCCGAGGCg -3'
miRNA:   3'- aaGCCGC--UUGACa-----------GGUGCGGGCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 33081 0.7 0.364082
Target:  5'- -aCGGCGGaacagGCUGgcaUgACGCCCGAAGa -3'
miRNA:   3'- aaGCCGCU-----UGACa--GgUGCGGGCUUCg -5'
26837 3' -56.4 NC_005809.1 + 11334 0.69 0.381856
Target:  5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3'
miRNA:   3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5'
26837 3' -56.4 NC_005809.1 + 17915 0.68 0.454428
Target:  5'- -gCGGCGGGCgcgacaacaccaUCCugGCCCGccGGCa -3'
miRNA:   3'- aaGCCGCUUGac----------AGGugCGGGCu-UCG- -5'
26837 3' -56.4 NC_005809.1 + 4626 0.68 0.419095
Target:  5'- gUCGGCGGggauGCUGggCCACGCUgCGucGGCc -3'
miRNA:   3'- aAGCCGCU----UGACa-GGUGCGG-GCu-UCG- -5'
26837 3' -56.4 NC_005809.1 + 20168 0.69 0.372897
Target:  5'- -cUGGCGAAC-GUCaCGCGCuuGAuGCu -3'
miRNA:   3'- aaGCCGCUUGaCAG-GUGCGggCUuCG- -5'
26837 3' -56.4 NC_005809.1 + 26573 0.74 0.180761
Target:  5'- -cCGGCGAcCUGUCCcuGCGCgCGgcGCa -3'
miRNA:   3'- aaGCCGCUuGACAGG--UGCGgGCuuCG- -5'
26837 3' -56.4 NC_005809.1 + 30641 0.68 0.428743
Target:  5'- gUCGGU--ACUGUCCA-GCCUGGgcacGGCg -3'
miRNA:   3'- aAGCCGcuUGACAGGUgCGGGCU----UCG- -5'
26837 3' -56.4 NC_005809.1 + 13352 0.73 0.224472
Target:  5'- cUUCGGCGGACUGgacgCCaugcgcGCGUCCGAccuGCc -3'
miRNA:   3'- -AAGCCGCUUGACa---GG------UGCGGGCUu--CG- -5'
26837 3' -56.4 NC_005809.1 + 41061 0.69 0.372897
Target:  5'- -gCGGCGAAUaaggGggcgCCAUGUCCGAccAGCa -3'
miRNA:   3'- aaGCCGCUUGa---Ca---GGUGCGGGCU--UCG- -5'
26837 3' -56.4 NC_005809.1 + 5154 0.68 0.448426
Target:  5'- --aGGCGGccgucGCUGcUCACGCCCuuGGCg -3'
miRNA:   3'- aagCCGCU-----UGACaGGUGCGGGcuUCG- -5'
26837 3' -56.4 NC_005809.1 + 9719 0.67 0.489228
Target:  5'- cUCGGCGccGACcGUCUGCGgCCaggCGAAGCc -3'
miRNA:   3'- aAGCCGC--UUGaCAGGUGC-GG---GCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 9894 0.72 0.25547
Target:  5'- gUCGGCGAACUGcucgggcUUCACGUCgGGcAGCu -3'
miRNA:   3'- aAGCCGCUUGAC-------AGGUGCGGgCU-UCG- -5'
26837 3' -56.4 NC_005809.1 + 29624 0.71 0.314273
Target:  5'- aUUCGcGCGAACa-UCC-CGCCCGAgaAGCu -3'
miRNA:   3'- -AAGC-CGCUUGacAGGuGCGGGCU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.